Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLY entry

There are 11 chains in PDB entry 5NLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 394ASP 469
A
 VAL 471TYR 513
A
 ILE 515ILE 515
A
 ASN 517TYR 634
A
 ARG 636GLN 757
B
 SER 397TYR 513
B
 ILE 515ILE 515
B
 ASN 517GLY 621
B
 VAL 623VAL 632
B
 TYR 634TYR 634
B
 ARG 636PRO 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5NLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
399 416Right-handed alpha
Helix 2
AA2
A
416 427Right-handed alpha
Helix 3
AA3
A
433 444Right-handed alpha
Helix 4
AA4
A
448 457Right-handed alpha
Helix 5
AA5
A
461 473Right-handed alpha
Helix 6
AA6
A
481 493Right-handed alpha
Helix 7
AA7
A
498 517Right-handed alpha
Helix 8
AA8
A
528 545Right-handed alpha
Helix 9
AA9
A
550 554Right-handed 310
Helix 10
AB1
A
556 564Right-handed alpha
Helix 11
AB2
A
574 588Right-handed alpha
Helix 12
AB3
A
595 606Right-handed alpha
Helix 13
AB4
A
724 750Right-handed alpha
Helix 14
AB5
A
751 756Right-handed alpha
Helix 15
AB6
B
399 416Right-handed alpha
Helix 16
AB7
B
416 427Right-handed alpha
Helix 17
AB8
B
433 444Right-handed alpha
Helix 18
AB9
B
448 457Right-handed alpha
Helix 19
AC1
B
461 474Right-handed alpha
Helix 20
AC2
B
481 493Right-handed alpha
Helix 21
AC3
B
498 517Right-handed alpha
Helix 22
AC4
B
517 522Right-handed alpha
Helix 23
AC5
B
528 545Right-handed alpha
Helix 24
AC6
B
550 554Right-handed 310
Helix 25
AC7
B
556 564Right-handed alpha
Helix 26
AC8
B
574 588Right-handed alpha
Helix 27
AC9
B
595 606Right-handed alpha
Helix 28
AD1
B
724 749Right-handed alpha
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There are 2 sheets in PDB entry 5NLY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
676 685parallel
Strand 3
A
662 671anti-parallel
Strand 4
A
653 659anti-parallel
Strand 5
A
631 639anti-parallel
Strand 6
A
715 721anti-parallel
Strand 7
A
702 707anti-parallel
Strand 8
A
689 694anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 608first strand
Strand 2
B
675 685parallel
Strand 3
B
662 672anti-parallel
Strand 4
B
653 659anti-parallel
Strand 5
B
631 639anti-parallel
Strand 6
B
715 721anti-parallel
Strand 7
B
702 707anti-parallel
Strand 8
B
689 694anti-parallel
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