Analysis of interatomic Contacts of Structural Units in PDB entry:
5NM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NM6 entry

There are 2 chains in PDB entry 5NM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3TYR 140
B
 ALA 3LEU 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 5NM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 116Right-handed 310
Helix 2
AA2
B
114 116Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5NM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
118 125anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
44 52anti-parallel
Strand 5
A
57 61anti-parallel
Strand 6
A
72 73anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
18 25anti-parallel
Strand 5
A
128 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
118 125anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
44 52anti-parallel
Strand 5
B
57 64anti-parallel
Strand 6
B
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
118 125anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
44 52anti-parallel
Strand 5
B
57 64anti-parallel
Strand 6
B
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
18 25anti-parallel
Strand 5
B
128 136anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il