Analysis of interatomic Contacts of Structural Units in PDB entry:
5NM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NM7 entry

There are 2 chains in PDB entry 5NM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 TYR 2ALA 266
A
 LYS 3ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5NM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
11 24Right-handed alpha
Helix 2
AA2
G
35 49Right-handed alpha
Helix 3
AA3
G
58 68Right-handed alpha
Helix 4
AA4
G
76 88Right-handed alpha
Helix 5
AA5
G
90 102Right-handed alpha
Helix 6
AA6
G
118 129Right-handed alpha
Helix 7
AA7
G
155 168Right-handed alpha
Helix 8
AA8
G
168 175Right-handed alpha
Helix 9
AA9
G
186 188Right-handed 310
Helix 10
AB1
G
195 206Right-handed alpha
Helix 11
AB2
G
206 220Right-handed alpha
Helix 12
AB3
G
221 230Right-handed alpha
Helix 13
AB4
G
232 242Right-handed alpha
Helix 14
AB5
G
249 266Right-handed alpha
Helix 15
AB6
A
11 24Right-handed alpha
Helix 16
AB7
A
35 49Right-handed alpha
Helix 17
AB8
A
58 68Right-handed alpha
Helix 18
AB9
A
76 88Right-handed alpha
Helix 19
AC1
A
90 102Right-handed alpha
Helix 20
AC2
A
118 130Right-handed alpha
Helix 21
AC3
A
135 140Right-handed alpha
Helix 22
AC4
A
155 168Right-handed alpha
Helix 23
AC5
A
168 175Right-handed alpha
Helix 24
AC6
A
186 189Right-handed 310
Helix 25
AC7
A
195 206Right-handed alpha
Helix 26
AC8
A
206 220Right-handed alpha
Helix 27
AC9
A
221 230Right-handed alpha
Helix 28
AD1
A
232 242Right-handed alpha
Helix 29
AD2
A
244 248Right-handed 310
Helix 30
AD3
A
249 264Right-handed alpha
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There are 2 sheets in PDB entry 5NM7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
115 117first strand
Strand 2
G
176 178anti-parallel
Strand 3
G
183 184anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
176 178anti-parallel
Strand 3
A
183 184anti-parallel
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