Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NMI entry

There are 22 chains in PDB entry 5NMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 445
B	VAL 17	LEU 439
C	HIS 8	TRP 379
D	ASP 2	LYS 241
E	SER 1	GLY 196
F	TRP 12	LYS 110
G	GLY 1	PRO 74
H	LEU 13	LYS 78
I	VAL 49	TYR 78
J	THR 4	LYS 62
K	ARG 15	THR 36
N	ALA 2	ARG 445
O	VAL 17	LEU 439
P	HIS 8	TRP 379
Q	ASP 2	LYS 241
R	SER 1	SER 72
S	TRP 12	LYS 110
T	ARG 2	ARG 81
U	GLU 11	LYS 78
V	VAL 49	TYR 78
W	ALA 2	GLU 60
X	ARG 15	THR 36

There are181 helices in PDB entry 5NMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	54	64	Right-handed alpha
Helix 3	AA3	A	73	82	Right-handed alpha
Helix 4	AA4	A	105	119	Right-handed alpha
Helix 5	AA5	A	123	144	Right-handed alpha
Helix 6	AA6	A	144	158	Right-handed alpha
Helix 7	AA7	A	161	165	Right-handed 310
Helix 8	AA8	A	170	177	Right-handed alpha
Helix 9	AA9	A	178	190	Right-handed alpha
Helix 10	AB1	A	204	216	Right-handed alpha
Helix 11	AB2	A	217	219	Right-handed 310
Helix 12	AB3	A	265	278	Right-handed alpha
Helix 13	AB4	A	286	290	Right-handed 310
Helix 14	AB5	A	292	301	Right-handed alpha
Helix 15	AB6	A	330	348	Right-handed alpha
Helix 16	AB7	A	350	369	Right-handed alpha
Helix 17	AB8	A	371	386	Right-handed alpha
Helix 18	AB9	A	391	402	Right-handed alpha
Helix 19	AC1	A	403	416	Right-handed alpha
Helix 20	AC2	A	433	441	Right-handed alpha
Helix 21	AC3	B	54	58	Right-handed 310
Helix 22	AC4	B	64	72	Right-handed alpha
Helix 23	AC5	B	73	75	Right-handed 310
Helix 24	AC6	B	81	92	Right-handed alpha
Helix 25	AC7	B	115	128	Right-handed alpha
Helix 26	AC8	B	133	141	Right-handed alpha
Helix 27	AC9	B	142	152	Right-handed alpha
Helix 28	AD1	B	154	168	Right-handed alpha
Helix 29	AD2	B	179	183	Right-handed 310
Helix 30	AD3	B	187	199	Right-handed alpha
Helix 31	AD4	B	212	223	Right-handed alpha
Helix 32	AD5	B	266	279	Right-handed alpha
Helix 33	AD6	B	293	303	Right-handed alpha
Helix 34	AD7	B	331	348	Right-handed alpha
Helix 35	AD8	B	353	372	Right-handed alpha
Helix 36	AD9	B	374	389	Right-handed alpha
Helix 37	AE1	B	394	404	Right-handed alpha
Helix 38	AE2	B	406	420	Right-handed alpha
Helix 39	AE3	C	10	19	Right-handed alpha
Helix 40	AE4	C	28	31	Right-handed 310
Helix 41	AE5	C	32	53	Right-handed alpha
Helix 42	AE6	C	61	72	Right-handed alpha
Helix 43	AE7	C	75	104	Right-handed alpha
Helix 44	AE8	C	105	108	Right-handed 310
Helix 45	AE9	C	109	133	Right-handed alpha
Helix 46	AF1	C	136	149	Right-handed alpha
Helix 47	AF2	C	150	153	Right-handed 310
Helix 48	AF3	C	156	166	Right-handed alpha
Helix 49	AF4	C	171	183	Right-handed alpha
Helix 50	AF5	C	184	204	Right-handed alpha
Helix 51	AF6	C	212	215	Right-handed 310
Helix 52	AF7	C	220	246	Right-handed alpha
Helix 53	AF8	C	252	257	Right-handed 310
Helix 54	AF9	C	271	273	Right-handed 310
Helix 55	AG1	C	274	284	Right-handed alpha
Helix 56	AG2	C	286	300	Right-handed alpha
Helix 57	AG3	C	303	308	Right-handed alpha
Helix 58	AG4	C	314	317	Right-handed 310
Helix 59	AG5	C	318	341	Right-handed alpha
Helix 60	AG6	C	346	364	Right-handed alpha
Helix 61	AG7	C	364	377	Right-handed alpha
Helix 62	AG8	D	22	36	Right-handed alpha
Helix 63	AG9	D	37	40	Right-handed 310
Helix 64	AH1	D	47	52	Right-handed alpha
Helix 65	AH2	D	57	68	Right-handed alpha
Helix 66	AH3	D	97	105	Right-handed alpha
Helix 67	AH4	D	115	120	Right-handed alpha
Helix 68	AH5	D	123	133	Right-handed alpha
Helix 69	AH6	D	178	195	Right-handed alpha
Helix 70	AH7	D	197	232	Right-handed alpha
Helix 71	AH8	E	1	5	Right-handed 310
Helix 72	AH9	E	15	19	Right-handed 310
Helix 73	AI1	E	25	63	Right-handed alpha
Helix 74	AI2	E	65	74	Right-handed alpha
Helix 75	AI3	E	102	112	Right-handed alpha
Helix 76	AI4	E	123	127	Right-handed 310
Helix 77	AI5	F	13	25	Right-handed alpha
Helix 78	AI6	F	26	30	Right-handed 310
Helix 79	AI7	F	32	36	Right-handed 310
Helix 80	AI8	F	40	50	Right-handed alpha
Helix 81	AI9	F	51	72	Right-handed alpha
Helix 82	AJ1	F	76	80	Right-handed 310
Helix 83	AJ2	F	90	110	Right-handed alpha
Helix 84	AJ3	G	28	71	Right-handed alpha
Helix 85	AJ4	H	15	25	Right-handed alpha
Helix 86	AJ5	H	27	47	Right-handed alpha
Helix 87	AJ6	H	54	73	Right-handed alpha
Helix 88	AJ7	I	51	56	Right-handed alpha
Helix 89	AJ8	J	5	13	Right-handed alpha
Helix 90	AJ9	J	16	47	Right-handed alpha
Helix 91	AK1	J	56	60	Right-handed 310
Helix 92	AK2	K	16	36	Right-handed alpha
Helix 93	AK3	N	3	11	Right-handed alpha
Helix 94	AK4	N	54	64	Right-handed alpha
Helix 95	AK5	N	73	82	Right-handed alpha
Helix 96	AK6	N	105	119	Right-handed alpha
Helix 97	AK7	N	123	144	Right-handed alpha
Helix 98	AK8	N	144	158	Right-handed alpha
Helix 99	AK9	N	161	165	Right-handed 310
Helix 100	AL1	N	170	177	Right-handed alpha
Helix 101	AL2	N	178	190	Right-handed alpha
Helix 102	AL3	N	204	216	Right-handed alpha
Helix 103	AL4	N	217	219	Right-handed 310
Helix 104	AL5	N	265	278	Right-handed alpha
Helix 105	AL6	N	286	290	Right-handed 310
Helix 106	AL7	N	292	301	Right-handed alpha
Helix 107	AL8	N	330	348	Right-handed alpha
Helix 108	AL9	N	350	369	Right-handed alpha
Helix 109	AM1	N	371	386	Right-handed alpha
Helix 110	AM2	N	391	402	Right-handed alpha
Helix 111	AM3	N	403	415	Right-handed alpha
Helix 112	AM4	N	433	441	Right-handed alpha
Helix 113	AM5	O	54	58	Right-handed 310
Helix 114	AM6	O	64	72	Right-handed alpha
Helix 115	AM7	O	73	75	Right-handed 310
Helix 116	AM8	O	81	92	Right-handed alpha
Helix 117	AM9	O	115	128	Right-handed alpha
Helix 118	AN1	O	133	141	Right-handed alpha
Helix 119	AN2	O	142	152	Right-handed alpha
Helix 120	AN3	O	154	168	Right-handed alpha
Helix 121	AN4	O	179	183	Right-handed 310
Helix 122	AN5	O	187	199	Right-handed alpha
Helix 123	AN6	O	212	223	Right-handed alpha
Helix 124	AN7	O	266	279	Right-handed alpha
Helix 125	AN8	O	293	303	Right-handed alpha
Helix 126	AN9	O	331	350	Right-handed alpha
Helix 127	AO1	O	353	372	Right-handed alpha
Helix 128	AO2	O	374	389	Right-handed alpha
Helix 129	AO3	O	394	404	Right-handed alpha
Helix 130	AO4	O	406	420	Right-handed alpha
Helix 131	AO5	P	9	19	Right-handed alpha
Helix 132	AO6	P	28	31	Right-handed 310
Helix 133	AO7	P	32	53	Right-handed alpha
Helix 134	AO8	P	61	72	Right-handed alpha
Helix 135	AO9	P	75	104	Right-handed alpha
Helix 136	AP1	P	105	108	Right-handed 310
Helix 137	AP2	P	109	133	Right-handed alpha
Helix 138	AP3	P	136	149	Right-handed alpha
Helix 139	AP4	P	150	153	Right-handed 310
Helix 140	AP5	P	156	166	Right-handed alpha
Helix 141	AP6	P	171	204	Right-handed alpha
Helix 142	AP7	P	212	215	Right-handed 310
Helix 143	AP8	P	220	246	Right-handed alpha
Helix 144	AP9	P	252	257	Right-handed 310
Helix 145	AQ1	P	271	273	Right-handed 310
Helix 146	AQ2	P	274	284	Right-handed alpha
Helix 147	AQ3	P	286	300	Right-handed alpha
Helix 148	AQ4	P	303	308	Right-handed alpha
Helix 149	AQ5	P	314	317	Right-handed 310
Helix 150	AQ6	P	318	341	Right-handed alpha
Helix 151	AQ7	P	346	364	Right-handed alpha
Helix 152	AQ8	P	364	377	Right-handed alpha
Helix 153	AQ9	Q	22	36	Right-handed alpha
Helix 154	AR1	Q	37	40	Right-handed 310
Helix 155	AR2	Q	47	52	Right-handed alpha
Helix 156	AR3	Q	57	68	Right-handed alpha
Helix 157	AR4	Q	97	105	Right-handed alpha
Helix 158	AR5	Q	115	120	Right-handed alpha
Helix 159	AR6	Q	123	133	Right-handed alpha
Helix 160	AR7	Q	178	195	Right-handed alpha
Helix 161	AR8	Q	197	232	Right-handed alpha
Helix 162	AR9	R	1	5	Right-handed 310
Helix 163	AS1	R	15	19	Right-handed 310
Helix 164	AS2	R	25	63	Right-handed alpha
Helix 165	AS3	R	65	71	Right-handed alpha
Helix 166	AS4	S	13	25	Right-handed alpha
Helix 167	AS5	S	26	30	Right-handed 310
Helix 168	AS6	S	32	36	Right-handed 310
Helix 169	AS7	S	40	50	Right-handed alpha
Helix 170	AS8	S	51	72	Right-handed alpha
Helix 171	AS9	S	76	80	Right-handed 310
Helix 172	AT1	S	90	110	Right-handed alpha
Helix 173	AT2	T	28	71	Right-handed alpha
Helix 174	AT3	U	15	25	Right-handed alpha
Helix 175	AT4	U	27	47	Right-handed alpha
Helix 176	AT5	U	54	73	Right-handed alpha
Helix 177	AT6	V	51	56	Right-handed alpha
Helix 178	AT7	W	5	13	Right-handed alpha
Helix 179	AT8	W	16	47	Right-handed alpha
Helix 180	AT9	W	56	60	Right-handed 310
Helix 181	AU1	X	16	36	Right-handed alpha

There are 18 sheets in PDB entry 5NMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	195	201	parallel
Strand 4	A	34	41	anti-parallel
Strand 5	A	95	102	anti-parallel
Strand 6	A	85	90	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	304	313	anti-parallel
Strand 3	A	318	326	anti-parallel
Strand 4	A	251	258	anti-parallel
Strand 5	A	421	426	anti-parallel
Strand 6	A	239	245	parallel
Strand 7	G	11	18	anti-parallel
Strand 8	D	234	237	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	204	209	parallel
Strand 4	B	44	51	anti-parallel
Strand 5	B	105	112	anti-parallel
Strand 6	B	95	100	anti-parallel
Strand 7	I	65	69	anti-parallel
Strand 8	I	75	77	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	247	first strand
Strand 2	B	422	428	parallel
Strand 3	B	254	260	anti-parallel
Strand 4	B	320	327	anti-parallel
Strand 5	B	308	315	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	217	219	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	72	first strand
Strand 2	D	81	84	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	157	158	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	193	195	anti-parallel
Strand 3	E	185	187	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	91	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	132	136	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	156	157	anti-parallel
Strand 3	E	164	165	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	18	first strand
Strand 2	N	24	29	anti-parallel
Strand 3	N	195	201	parallel
Strand 4	N	34	41	anti-parallel
Strand 5	N	95	102	anti-parallel
Strand 6	N	85	90	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	279	281	first strand
Strand 2	N	304	308	anti-parallel
Strand 3	N	318	326	anti-parallel
Strand 4	N	311	313	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	279	281	first strand
Strand 2	N	304	308	anti-parallel
Strand 3	N	318	326	anti-parallel
Strand 4	N	251	258	anti-parallel
Strand 5	N	421	426	anti-parallel
Strand 6	N	239	245	parallel
Strand 7	T	11	18	anti-parallel
Strand 8	Q	234	237	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	27	28	first strand
Strand 2	O	34	36	anti-parallel
Strand 3	O	204	207	parallel
Strand 4	O	44	52	anti-parallel
Strand 5	O	104	112	anti-parallel
Strand 6	O	95	100	anti-parallel
Strand 7	V	65	69	anti-parallel
Strand 8	V	75	77	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	243	247	first strand
Strand 2	O	422	428	parallel
Strand 3	O	254	260	anti-parallel
Strand 4	O	320	327	anti-parallel
Strand 5	O	308	315	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	22	24	first strand
Strand 2	P	217	219	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	69	72	first strand
Strand 2	Q	81	84	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	148	149	first strand
Strand 2	Q	157	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMI