Analysis of interatomic Contacts of Structural Units in PDB entry:
5NML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NML entry

There are 10 chains in PDB entry 5NML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 120
B	GLN 2	SER 119
C	GLN 2	SER 119
D	VAL 3	SER 119
E	GLN 2	SER 119
F	GLN 2	SER 119
G	VAL 3	SER 119
H	VAL 3	SER 119
I	GLN 2	SER 118
J	GLY 10	SER 119

There are 30 helices in PDB entry 5NML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	B	28	33	Right-handed alpha
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	C	28	33	Right-handed alpha
Helix 8	AA8	C	62	65	Right-handed 310
Helix 9	AA9	C	87	91	Right-handed 310
Helix 10	AB1	D	62	65	Right-handed 310
Helix 11	AB2	D	87	91	Right-handed 310
Helix 12	AB3	D	100	104	Right-handed 310
Helix 13	AB4	E	28	33	Right-handed alpha
Helix 14	AB5	E	62	65	Right-handed 310
Helix 15	AB6	E	87	91	Right-handed 310
Helix 16	AB7	F	28	33	Right-handed alpha
Helix 17	AB8	F	62	65	Right-handed 310
Helix 18	AB9	F	87	91	Right-handed 310
Helix 19	AC1	G	28	33	Right-handed alpha
Helix 20	AC2	G	62	65	Right-handed 310
Helix 21	AC3	G	87	91	Right-handed 310
Helix 22	AC4	H	28	33	Right-handed alpha
Helix 23	AC5	H	62	65	Right-handed 310
Helix 24	AC6	H	87	91	Right-handed 310
Helix 25	AC7	I	28	33	Right-handed alpha
Helix 26	AC8	I	62	65	Right-handed 310
Helix 27	AC9	I	87	91	Right-handed 310
Helix 28	AD1	I	100	104	Right-handed 310
Helix 29	AD2	J	62	65	Right-handed 310
Helix 30	AD3	J	87	91	Right-handed 310

There are 21 sheets in PDB entry 5NML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	113	118	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	35	40	anti-parallel
Strand 5	A	47	52	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	113	118	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	52	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	113	118	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	47	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	113	118	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	113	118	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	47	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	47	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	113	118	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	47	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	113	118	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	8	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	113	117	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	47	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	14	first strand
Strand 2	J	114	118	parallel
Strand 3	J	92	93	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	21	first strand
Strand 2	J	81	84	anti-parallel
Strand 3	J	68	69	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	50	52	anti-parallel
Strand 3	J	35	38	anti-parallel
Strand 4	J	95	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NML

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NML