Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NMP entry

There are 5 chains in PDB entry 5NMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	GLU 263
B	THR 4	GLU 263
C	THR 4	GLU 263
D	ALA 1	GLU 263
E	ALA 1	ILE 241

There are111 helices in PDB entry 5NMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	19	Right-handed alpha
Helix 2	AA2	A	82	89	Right-handed 310
Helix 3	AA3	A	100	103	Right-handed 310
Helix 4	AA4	A	113	118	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	151	156	Right-handed 310
Helix 7	AA7	A	158	164	Right-handed alpha
Helix 8	AA8	A	176	186	Right-handed alpha
Helix 9	AA9	A	201	207	Right-handed 310
Helix 10	AB1	A	211	220	Right-handed alpha
Helix 11	AB2	A	230	234	Right-handed 310
Helix 12	AB3	B	7	19	Right-handed alpha
Helix 13	AB4	B	82	89	Right-handed 310
Helix 14	AB5	B	100	103	Right-handed 310
Helix 15	AB6	B	113	118	Right-handed alpha
Helix 16	AB7	B	126	138	Right-handed alpha
Helix 17	AB8	B	151	156	Right-handed 310
Helix 18	AB9	B	158	164	Right-handed alpha
Helix 19	AC1	B	176	186	Right-handed alpha
Helix 20	AC2	B	201	206	Right-handed 310
Helix 21	AC3	B	211	220	Right-handed alpha
Helix 22	AC4	B	230	234	Right-handed 310
Helix 23	AC5	C	7	19	Right-handed alpha
Helix 24	AC6	C	82	89	Right-handed 310
Helix 25	AC7	C	100	103	Right-handed 310
Helix 26	AC8	C	113	118	Right-handed alpha
Helix 27	AC9	C	126	138	Right-handed alpha
Helix 28	AD1	C	151	157	Right-handed 310
Helix 29	AD2	C	158	164	Right-handed alpha
Helix 30	AD3	C	176	186	Right-handed alpha
Helix 31	AD4	C	201	207	Right-handed 310
Helix 32	AD5	C	211	220	Right-handed alpha
Helix 33	AD6	C	230	234	Right-handed 310
Helix 34	AD7	D	7	19	Right-handed alpha
Helix 35	AD8	D	82	89	Right-handed 310
Helix 36	AD9	D	100	103	Right-handed 310
Helix 37	AE1	D	113	118	Right-handed alpha
Helix 38	AE2	D	126	138	Right-handed alpha
Helix 39	AE3	D	151	156	Right-handed 310
Helix 40	AE4	D	158	164	Right-handed alpha
Helix 41	AE5	D	176	186	Right-handed alpha
Helix 42	AE6	D	201	206	Right-handed 310
Helix 43	AE7	D	211	220	Right-handed alpha
Helix 44	AE8	D	230	234	Right-handed 310
Helix 45	AE9	E	7	19	Right-handed alpha
Helix 46	AF1	E	82	89	Right-handed 310
Helix 47	AF2	E	100	103	Right-handed 310
Helix 48	AF3	E	113	120	Right-handed alpha
Helix 49	AF4	E	126	138	Right-handed alpha
Helix 50	AF5	E	151	156	Right-handed 310
Helix 51	AF6	E	158	164	Right-handed alpha
Helix 52	AF7	E	176	186	Right-handed alpha
Helix 53	AF8	E	201	207	Right-handed 310
Helix 54	AF9	E	211	218	Right-handed alpha
Helix 55	AG1	E	219	221	Right-handed 310
Helix 56	AG2	E	230	234	Right-handed 310
Helix 57	AG3	F	7	19	Right-handed alpha
Helix 58	AG4	F	82	89	Right-handed 310
Helix 59	AG5	F	100	103	Right-handed 310
Helix 60	AG6	F	113	120	Right-handed alpha
Helix 61	AG7	F	126	138	Right-handed alpha
Helix 62	AG8	F	151	156	Right-handed 310
Helix 63	AG9	F	158	164	Right-handed alpha
Helix 64	AH1	F	176	186	Right-handed alpha
Helix 65	AH2	F	201	206	Right-handed 310
Helix 66	AH3	F	211	220	Right-handed alpha
Helix 67	AH4	F	230	234	Right-handed 310
Helix 68	AH5	G	7	19	Right-handed alpha
Helix 69	AH6	G	82	89	Right-handed 310
Helix 70	AH7	G	100	103	Right-handed 310
Helix 71	AH8	G	113	118	Right-handed alpha
Helix 72	AH9	G	126	138	Right-handed alpha
Helix 73	AI1	G	151	156	Right-handed 310
Helix 74	AI2	G	158	164	Right-handed alpha
Helix 75	AI3	G	176	186	Right-handed alpha
Helix 76	AI4	G	201	207	Right-handed 310
Helix 77	AI5	G	211	220	Right-handed alpha
Helix 78	AI6	G	230	234	Right-handed 310
Helix 79	AI7	H	8	18	Right-handed alpha
Helix 80	AI8	H	82	89	Right-handed 310
Helix 81	AI9	H	100	103	Right-handed 310
Helix 82	AJ1	H	113	118	Right-handed alpha
Helix 83	AJ2	H	126	138	Right-handed alpha
Helix 84	AJ3	H	151	156	Right-handed 310
Helix 85	AJ4	H	158	164	Right-handed alpha
Helix 86	AJ5	H	176	186	Right-handed alpha
Helix 87	AJ6	H	201	206	Right-handed 310
Helix 88	AJ7	H	211	220	Right-handed alpha
Helix 89	AJ8	H	230	234	Right-handed 310
Helix 90	AJ9	I	7	19	Right-handed alpha
Helix 91	AK1	I	82	89	Right-handed 310
Helix 92	AK2	I	100	103	Right-handed 310
Helix 93	AK3	I	113	118	Right-handed alpha
Helix 94	AK4	I	126	138	Right-handed alpha
Helix 95	AK5	I	151	156	Right-handed 310
Helix 96	AK6	I	158	164	Right-handed alpha
Helix 97	AK7	I	176	186	Right-handed alpha
Helix 98	AK8	I	201	207	Right-handed 310
Helix 99	AK9	I	211	220	Right-handed alpha
Helix 100	AL1	I	230	234	Right-handed 310
Helix 101	AL2	J	7	19	Right-handed alpha
Helix 102	AL3	J	82	89	Right-handed 310
Helix 103	AL4	J	100	103	Right-handed 310
Helix 104	AL5	J	113	120	Right-handed alpha
Helix 105	AL6	J	126	138	Right-handed alpha
Helix 106	AL7	J	151	156	Right-handed 310
Helix 107	AL8	J	158	164	Right-handed alpha
Helix 108	AL9	J	176	186	Right-handed alpha
Helix 109	AM1	J	201	207	Right-handed 310
Helix 110	AM2	J	211	220	Right-handed alpha
Helix 111	AM3	J	230	234	Right-handed 310

There are 35 sheets in PDB entry 5NMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	259	262	anti-parallel
Strand 3	A	237	242	anti-parallel
Strand 4	A	105	112	anti-parallel
Strand 5	A	145	149	parallel
Strand 6	A	191	193	parallel
Strand 7	A	223	226	parallel
Strand 8	A	78	80	anti-parallel
Strand 9	A	253	255	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	58	first strand
Strand 2	A	61	72	anti-parallel
Strand 3	B	61	72	anti-parallel
Strand 4	B	50	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	174	175	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	169	170	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	259	262	anti-parallel
Strand 3	B	237	242	anti-parallel
Strand 4	B	105	112	anti-parallel
Strand 5	B	145	149	parallel
Strand 6	B	191	194	parallel
Strand 7	B	223	226	parallel
Strand 8	B	78	80	anti-parallel
Strand 9	B	253	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	174	175	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	169	170	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	259	262	anti-parallel
Strand 3	C	237	242	anti-parallel
Strand 4	C	105	112	anti-parallel
Strand 5	C	145	149	parallel
Strand 6	C	191	194	parallel
Strand 7	C	223	226	parallel
Strand 8	C	78	80	anti-parallel
Strand 9	C	253	255	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	56	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	D	65	72	anti-parallel
Strand 4	D	50	56	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	174	175	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	259	262	anti-parallel
Strand 3	D	237	242	anti-parallel
Strand 4	D	105	112	anti-parallel
Strand 5	D	145	149	parallel
Strand 6	D	191	193	parallel
Strand 7	D	223	226	parallel
Strand 8	D	78	80	anti-parallel
Strand 9	D	253	255	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	174	175	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	169	170	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	259	262	anti-parallel
Strand 3	E	237	242	anti-parallel
Strand 4	E	105	112	anti-parallel
Strand 5	E	145	149	parallel
Strand 6	E	191	194	parallel
Strand 7	E	223	226	parallel
Strand 8	E	78	80	anti-parallel
Strand 9	E	253	255	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	58	first strand
Strand 2	E	61	72	anti-parallel
Strand 3	F	61	72	anti-parallel
Strand 4	F	50	58	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	174	175	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	166	first strand
Strand 2	E	169	170	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	25	first strand
Strand 2	F	259	262	anti-parallel
Strand 3	F	239	242	anti-parallel
Strand 4	F	105	112	anti-parallel
Strand 5	F	145	149	parallel
Strand 6	F	191	193	parallel
Strand 7	F	223	226	parallel
Strand 8	F	78	80	anti-parallel
Strand 9	F	253	255	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	174	175	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	166	first strand
Strand 2	F	169	170	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	25	first strand
Strand 2	G	259	262	anti-parallel
Strand 3	G	237	242	anti-parallel
Strand 4	G	105	112	anti-parallel
Strand 5	G	145	149	parallel
Strand 6	G	191	194	parallel
Strand 7	G	223	226	parallel
Strand 8	G	78	80	anti-parallel
Strand 9	G	253	255	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	56	first strand
Strand 2	G	65	72	anti-parallel
Strand 3	H	65	72	anti-parallel
Strand 4	H	50	56	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	125	first strand
Strand 2	G	174	175	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	169	170	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	25	first strand
Strand 2	H	259	262	anti-parallel
Strand 3	H	239	242	anti-parallel
Strand 4	H	105	112	anti-parallel
Strand 5	H	145	149	parallel
Strand 6	H	191	193	parallel
Strand 7	H	223	226	parallel
Strand 8	H	78	80	anti-parallel
Strand 9	H	253	255	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	125	first strand
Strand 2	H	174	175	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	166	first strand
Strand 2	H	169	170	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	25	first strand
Strand 2	I	259	262	anti-parallel
Strand 3	I	237	242	anti-parallel
Strand 4	I	105	112	anti-parallel
Strand 5	I	145	149	parallel
Strand 6	I	191	194	parallel
Strand 7	I	223	226	parallel
Strand 8	I	78	80	anti-parallel
Strand 9	I	253	255	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	56	first strand
Strand 2	I	65	72	anti-parallel
Strand 3	J	65	72	anti-parallel
Strand 4	J	50	56	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	125	first strand
Strand 2	I	174	175	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	166	first strand
Strand 2	I	169	170	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	25	first strand
Strand 2	J	259	262	anti-parallel
Strand 3	J	237	242	anti-parallel
Strand 4	J	105	112	anti-parallel
Strand 5	J	145	149	parallel
Strand 6	J	191	194	parallel
Strand 7	J	223	226	parallel
Strand 8	J	78	80	anti-parallel
Strand 9	J	253	255	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	125	first strand
Strand 2	J	174	175	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	166	first strand
Strand 2	J	169	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMP