Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NMS entry

There are 12 chains in PDB entry 5NMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	GLN 184
B	ARG 83	GLN 184
C	LEU 42	GLN 184
E	ARG 83	GLN 184
D	LEU 42	GLN 184
F	ARG 83	GLN 184
G	LEU 42	GLN 184
H	ARG 83	GLN 184
I	LEU 42	GLN 184
K	ARG 83	GLN 184
J	LEU 42	GLN 184
L	ARG 83	GLN 184

There are 18 helices in PDB entry 5NMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	66	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed alpha
Helix 3	AA3	B	105	107	Right-handed 310
Helix 4	AA4	C	60	66	Right-handed alpha
Helix 5	AA5	C	75	80	Right-handed alpha
Helix 6	AA6	E	105	107	Right-handed 310
Helix 7	AA7	D	60	66	Right-handed alpha
Helix 8	AA8	D	75	80	Right-handed alpha
Helix 9	AA9	F	105	107	Right-handed 310
Helix 10	AB1	G	60	66	Right-handed alpha
Helix 11	AB2	G	75	80	Right-handed alpha
Helix 12	AB3	H	105	107	Right-handed 310
Helix 13	AB4	I	60	66	Right-handed alpha
Helix 14	AB5	I	75	80	Right-handed alpha
Helix 15	AB6	K	105	107	Right-handed 310
Helix 16	AB7	J	60	66	Right-handed alpha
Helix 17	AB8	J	75	80	Right-handed alpha
Helix 18	AB9	L	105	107	Right-handed 310

There are 24 sheets in PDB entry 5NMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	100	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	92	100	anti-parallel
Strand 3	B	164	170	anti-parallel
Strand 4	B	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	114	first strand
Strand 2	B	117	123	anti-parallel
Strand 3	B	140	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	100	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	114	first strand
Strand 2	C	117	122	anti-parallel
Strand 3	C	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	87	first strand
Strand 2	E	92	100	anti-parallel
Strand 3	E	164	170	anti-parallel
Strand 4	E	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	114	first strand
Strand 2	E	117	123	anti-parallel
Strand 3	E	140	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	100	first strand
Strand 2	D	164	170	anti-parallel
Strand 3	D	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	114	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	92	100	anti-parallel
Strand 3	F	164	170	anti-parallel
Strand 4	F	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	114	first strand
Strand 2	F	117	123	anti-parallel
Strand 3	F	140	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	100	first strand
Strand 2	G	164	170	anti-parallel
Strand 3	G	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	114	first strand
Strand 2	G	117	122	anti-parallel
Strand 3	G	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	87	first strand
Strand 2	H	92	100	anti-parallel
Strand 3	H	164	170	anti-parallel
Strand 4	H	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	114	first strand
Strand 2	H	117	123	anti-parallel
Strand 3	H	140	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	92	100	first strand
Strand 2	I	164	170	anti-parallel
Strand 3	I	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	109	114	first strand
Strand 2	I	117	122	anti-parallel
Strand 3	I	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	87	first strand
Strand 2	K	92	100	anti-parallel
Strand 3	K	164	170	anti-parallel
Strand 4	K	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	109	114	first strand
Strand 2	K	117	123	anti-parallel
Strand 3	K	140	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	92	100	first strand
Strand 2	J	164	170	anti-parallel
Strand 3	J	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	109	114	first strand
Strand 2	J	117	122	anti-parallel
Strand 3	J	141	145	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	86	87	first strand
Strand 2	L	92	100	anti-parallel
Strand 3	L	164	170	anti-parallel
Strand 4	L	157	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	109	114	first strand
Strand 2	L	117	123	anti-parallel
Strand 3	L	140	145	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMS