Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NMW entry

There are 4 chains in PDB entry 5NMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 413
B	MET 1	ILE 413
C	MET 1	LYS 412
D	MET 1	ILE 413

There are 66 helices in PDB entry 5NMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	68	73	Right-handed alpha
Helix 4	AA4	A	88	103	Right-handed alpha
Helix 5	AA5	A	105	107	Right-handed 310
Helix 6	AA6	A	162	166	Right-handed 310
Helix 7	AA7	A	174	176	Right-handed 310
Helix 8	AA8	A	179	183	Right-handed 310
Helix 9	AA9	A	196	205	Right-handed alpha
Helix 10	AB1	A	269	273	Right-handed 310
Helix 11	AB2	A	306	323	Right-handed alpha
Helix 12	AB3	A	330	348	Right-handed alpha
Helix 13	AB4	A	355	357	Right-handed 310
Helix 14	AB5	A	358	371	Right-handed alpha
Helix 15	AB6	A	376	387	Right-handed alpha
Helix 16	AB7	A	388	393	Right-handed alpha
Helix 17	AB8	A	396	400	Right-handed 310
Helix 18	AB9	B	10	23	Right-handed alpha
Helix 19	AC1	B	37	41	Right-handed 310
Helix 20	AC2	B	68	73	Right-handed alpha
Helix 21	AC3	B	88	103	Right-handed alpha
Helix 22	AC4	B	105	107	Right-handed 310
Helix 23	AC5	B	162	166	Right-handed 310
Helix 24	AC6	B	174	176	Right-handed 310
Helix 25	AC7	B	179	183	Right-handed 310
Helix 26	AC8	B	196	205	Right-handed alpha
Helix 27	AC9	B	269	273	Right-handed 310
Helix 28	AD1	B	306	323	Right-handed alpha
Helix 29	AD2	B	330	348	Right-handed alpha
Helix 30	AD3	B	358	371	Right-handed alpha
Helix 31	AD4	B	377	387	Right-handed alpha
Helix 32	AD5	B	388	393	Right-handed alpha
Helix 33	AD6	B	396	400	Right-handed 310
Helix 34	AD7	C	10	23	Right-handed alpha
Helix 35	AD8	C	37	41	Right-handed 310
Helix 36	AD9	C	68	73	Right-handed alpha
Helix 37	AE1	C	88	103	Right-handed alpha
Helix 38	AE2	C	105	107	Right-handed 310
Helix 39	AE3	C	162	166	Right-handed 310
Helix 40	AE4	C	174	176	Right-handed 310
Helix 41	AE5	C	179	183	Right-handed 310
Helix 42	AE6	C	196	205	Right-handed alpha
Helix 43	AE7	C	269	273	Right-handed 310
Helix 44	AE8	C	286	288	Right-handed 310
Helix 45	AE9	C	306	323	Right-handed alpha
Helix 46	AF1	C	330	348	Right-handed alpha
Helix 47	AF2	C	358	371	Right-handed alpha
Helix 48	AF3	C	377	387	Right-handed alpha
Helix 49	AF4	C	388	393	Right-handed alpha
Helix 50	AF5	C	396	400	Right-handed 310
Helix 51	AF6	D	10	23	Right-handed alpha
Helix 52	AF7	D	37	41	Right-handed 310
Helix 53	AF8	D	68	73	Right-handed alpha
Helix 54	AF9	D	88	103	Right-handed alpha
Helix 55	AG1	D	105	107	Right-handed 310
Helix 56	AG2	D	162	166	Right-handed 310
Helix 57	AG3	D	174	176	Right-handed 310
Helix 58	AG4	D	179	183	Right-handed 310
Helix 59	AG5	D	196	205	Right-handed alpha
Helix 60	AG6	D	269	273	Right-handed 310
Helix 61	AG7	D	306	323	Right-handed alpha
Helix 62	AG8	D	330	348	Right-handed alpha
Helix 63	AG9	D	358	371	Right-handed alpha
Helix 64	AH1	D	376	387	Right-handed alpha
Helix 65	AH2	D	388	393	Right-handed alpha
Helix 66	AH3	D	396	400	Right-handed 310

There are 28 sheets in PDB entry 5NMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	26	31	parallel
Strand 3	A	3	7	parallel
Strand 4	A	144	147	parallel
Strand 5	A	296	298	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	121	first strand
Strand 2	A	124	131	anti-parallel
Strand 3	A	137	142	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	254	258	parallel
Strand 3	A	186	191	parallel
Strand 4	A	209	213	parallel
Strand 5	A	228	231	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	241	244	anti-parallel
Strand 3	A	249	251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	281	282	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	289	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	410	413	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	26	30	parallel
Strand 3	B	3	7	parallel
Strand 4	B	144	147	parallel
Strand 5	B	296	298	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	121	first strand
Strand 2	B	124	131	anti-parallel
Strand 3	B	137	142	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	254	257	parallel
Strand 3	B	186	190	parallel
Strand 4	B	209	213	parallel
Strand 5	B	228	231	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	241	244	anti-parallel
Strand 3	B	249	251	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	281	282	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	289	290	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	404	first strand
Strand 2	B	410	412	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	26	30	parallel
Strand 3	C	3	7	parallel
Strand 4	C	144	147	parallel
Strand 5	C	296	298	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	121	first strand
Strand 2	C	124	131	anti-parallel
Strand 3	C	137	142	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	254	258	parallel
Strand 3	C	186	191	parallel
Strand 4	C	209	213	parallel
Strand 5	C	228	231	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	241	244	anti-parallel
Strand 3	C	249	251	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	281	282	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	289	290	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	410	411	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	26	30	parallel
Strand 3	D	3	7	parallel
Strand 4	D	144	147	parallel
Strand 5	D	296	298	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	121	first strand
Strand 2	D	124	131	anti-parallel
Strand 3	D	137	142	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	172	first strand
Strand 2	D	254	258	parallel
Strand 3	D	186	191	parallel
Strand 4	D	209	213	parallel
Strand 5	D	228	231	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	237	first strand
Strand 2	D	241	244	anti-parallel
Strand 3	D	249	251	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	281	282	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	289	290	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	404	first strand
Strand 2	D	410	413	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NMW