Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NNE entry

There are 4 chains in PDB entry 5NNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 42THR 166
C
 GLY 1198ALA 1200
C
 GLY 1202LYS 1203
C
 THR 1205MET 1207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5NNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 69Right-handed alpha
Helix 2
AA2
A
69 76Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
121 140Right-handed alpha
Helix 7
AA7
A
144 162Right-handed alpha
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There are no sheets in PDB entry 5NNE
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il