Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NNJ entry

There are 2 chains in PDB entry 5NNJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 53	ASN 713
B	CYS 53	LYS 689

There are 36 helices in PDB entry 5NNJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	65	Right-handed alpha
Helix 2	AA2	A	125	129	Right-handed 310
Helix 3	AA3	A	143	147	Right-handed 310
Helix 4	AA4	A	431	437	Right-handed alpha
Helix 5	AA5	A	463	469	Right-handed alpha
Helix 6	AA6	A	580	584	Right-handed 310
Helix 7	AA7	A	636	638	Right-handed 310
Helix 8	AA8	A	659	662	Right-handed 310
Helix 9	AA9	B	59	65	Right-handed alpha
Helix 10	AB1	B	125	129	Right-handed 310
Helix 11	AB2	B	143	147	Right-handed 310
Helix 12	AB3	B	230	232	Right-handed 310
Helix 13	AB4	B	431	437	Right-handed alpha
Helix 14	AB5	B	463	469	Right-handed alpha
Helix 15	AB6	B	496	499	Right-handed 310
Helix 16	AB7	B	580	584	Right-handed 310
Helix 17	AB8	B	636	638	Right-handed 310
Helix 18	AB9	B	659	662	Right-handed 310
Helix 19	AC1	D	59	65	Right-handed alpha
Helix 20	AC2	D	125	129	Right-handed 310
Helix 21	AC3	D	431	437	Right-handed alpha
Helix 22	AC4	D	463	469	Right-handed alpha
Helix 23	AC5	D	496	499	Right-handed 310
Helix 24	AC6	D	580	584	Right-handed 310
Helix 25	AC7	D	636	638	Right-handed 310
Helix 26	AC8	D	659	662	Right-handed 310
Helix 27	AC9	C	59	65	Right-handed alpha
Helix 28	AD1	C	125	129	Right-handed 310
Helix 29	AD2	C	143	147	Right-handed 310
Helix 30	AD3	C	230	232	Right-handed 310
Helix 31	AD4	C	431	437	Right-handed alpha
Helix 32	AD5	C	463	469	Right-handed alpha
Helix 33	AD6	C	496	499	Right-handed 310
Helix 34	AD7	C	580	584	Right-handed 310
Helix 35	AD8	C	636	638	Right-handed 310
Helix 36	AD9	C	659	662	Right-handed 310

There are 55 sheets in PDB entry 5NNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	563	570	anti-parallel
Strand 3	A	549	556	anti-parallel
Strand 4	A	535	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	84	first strand
Strand 2	A	90	96	anti-parallel
Strand 3	A	111	114	anti-parallel
Strand 4	A	122	123	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	149	155	anti-parallel
Strand 3	A	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	149	155	anti-parallel
Strand 3	A	163	167	anti-parallel
Strand 4	A	175	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	206	209	anti-parallel
Strand 4	A	217	220	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	234	238	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	265	276	anti-parallel
Strand 5	A	279	285	anti-parallel
Strand 6	A	292	297	anti-parallel
Strand 7	A	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	323	first strand
Strand 2	A	328	333	anti-parallel
Strand 3	A	340	345	anti-parallel
Strand 4	A	354	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	392	397	anti-parallel
Strand 4	A	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	455	460	anti-parallel
Strand 3	A	471	475	anti-parallel
Strand 4	A	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	495	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	513	517	anti-parallel
Strand 4	A	525	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	605	606	anti-parallel
Strand 3	A	631	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	642	first strand
Strand 2	A	682	684	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	647	first strand
Strand 2	A	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	669	first strand
Strand 2	A	674	679	anti-parallel
Strand 3	A	698	702	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	563	570	anti-parallel
Strand 3	B	549	556	anti-parallel
Strand 4	B	535	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	90	96	anti-parallel
Strand 3	B	111	114	anti-parallel
Strand 4	B	122	123	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	149	155	anti-parallel
Strand 3	B	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	149	155	anti-parallel
Strand 3	B	163	167	anti-parallel
Strand 4	B	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	206	209	anti-parallel
Strand 4	B	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	251	256	anti-parallel
Strand 4	B	264	276	anti-parallel
Strand 5	B	279	285	anti-parallel
Strand 6	B	292	297	anti-parallel
Strand 7	B	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	323	first strand
Strand 2	B	328	333	anti-parallel
Strand 3	B	340	345	anti-parallel
Strand 4	B	354	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	392	397	anti-parallel
Strand 4	B	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	430	first strand
Strand 2	B	455	460	anti-parallel
Strand 3	B	471	475	anti-parallel
Strand 4	B	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	495	first strand
Strand 2	B	500	505	anti-parallel
Strand 3	B	513	517	anti-parallel
Strand 4	B	525	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	602	first strand
Strand 2	B	605	606	anti-parallel
Strand 3	B	631	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	642	first strand
Strand 2	B	682	684	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	647	first strand
Strand 2	B	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	669	first strand
Strand 2	B	674	679	anti-parallel
Strand 3	B	698	702	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	563	569	anti-parallel
Strand 3	D	550	556	anti-parallel
Strand 4	D	535	541	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	91	97	anti-parallel
Strand 3	D	131	134	parallel
Strand 4	D	149	155	anti-parallel
Strand 5	D	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	123	first strand
Strand 2	D	111	114	anti-parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	131	134	parallel
Strand 5	D	149	155	anti-parallel
Strand 6	D	163	167	anti-parallel
Strand 7	D	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	197	200	anti-parallel
Strand 3	D	206	209	anti-parallel
Strand 4	D	217	220	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	234	238	anti-parallel
Strand 3	D	251	256	anti-parallel
Strand 4	D	264	276	anti-parallel
Strand 5	D	279	285	anti-parallel
Strand 6	D	292	297	anti-parallel
Strand 7	D	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	323	first strand
Strand 2	D	328	333	anti-parallel
Strand 3	D	340	345	anti-parallel
Strand 4	D	354	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	381	386	anti-parallel
Strand 3	D	392	397	anti-parallel
Strand 4	D	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	429	first strand
Strand 2	D	455	460	anti-parallel
Strand 3	D	471	475	anti-parallel
Strand 4	D	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	495	first strand
Strand 2	D	500	505	anti-parallel
Strand 3	D	513	517	anti-parallel
Strand 4	D	525	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	602	first strand
Strand 2	D	605	606	anti-parallel
Strand 3	D	631	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	640	642	first strand
Strand 2	D	682	684	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	647	first strand
Strand 2	D	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	667	669	first strand
Strand 2	D	674	679	anti-parallel
Strand 3	D	698	702	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	563	570	anti-parallel
Strand 3	C	549	556	anti-parallel
Strand 4	C	535	541	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	84	first strand
Strand 2	C	90	97	anti-parallel
Strand 3	C	131	134	parallel
Strand 4	C	149	155	anti-parallel
Strand 5	C	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	123	first strand
Strand 2	C	111	114	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	131	134	parallel
Strand 5	C	149	155	anti-parallel
Strand 6	C	163	167	anti-parallel
Strand 7	C	175	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	193	200	anti-parallel
Strand 3	C	206	209	anti-parallel
Strand 4	C	217	220	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	234	238	anti-parallel
Strand 3	C	251	256	anti-parallel
Strand 4	C	265	276	anti-parallel
Strand 5	C	279	285	anti-parallel
Strand 6	C	292	297	anti-parallel
Strand 7	C	305	306	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	323	first strand
Strand 2	C	328	333	anti-parallel
Strand 3	C	340	345	anti-parallel
Strand 4	C	354	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	381	386	anti-parallel
Strand 3	C	392	397	anti-parallel
Strand 4	C	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	455	460	anti-parallel
Strand 3	C	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	455	460	anti-parallel
Strand 3	C	471	475	anti-parallel
Strand 4	C	483	486	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	495	first strand
Strand 2	C	500	505	anti-parallel
Strand 3	C	513	517	anti-parallel
Strand 4	C	525	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	602	first strand
Strand 2	C	605	606	anti-parallel
Strand 3	C	631	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	640	642	first strand
Strand 2	C	682	684	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	647	first strand
Strand 2	C	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	669	first strand
Strand 2	C	674	679	anti-parallel
Strand 3	C	698	702	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NNJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNJ