Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NNR entry

There are 4 chains in PDB entry 5NNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4GLY 743
B
 ASP 2GLU 175
C
 PRO 26ALA 125
D
 PRO 4LEU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 5NNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
42 55Right-handed alpha
Helix 4
AA4
A
58 73Right-handed alpha
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
92 107Right-handed alpha
Helix 7
AA7
A
110 124Right-handed alpha
Helix 8
AA8
A
126 141Right-handed alpha
Helix 9
AA9
A
144 159Right-handed alpha
Helix 10
AB1
A
160 173Right-handed alpha
Helix 11
AB2
A
183 200Right-handed alpha
Helix 12
AB3
A
202 214Right-handed alpha
Helix 13
AB4
A
219 234Right-handed alpha
Helix 14
AB5
A
236 251Right-handed alpha
Helix 15
AB6
A
254 265Right-handed alpha
Helix 16
AB7
A
271 286Right-handed alpha
Helix 17
AB8
A
290 295Right-handed alpha
Helix 18
AB9
A
296 298Right-handed 310
Helix 19
AC1
A
301 320Right-handed alpha
Helix 20
AC2
A
323 329Right-handed alpha
Helix 21
AC3
A
330 333Right-handed 310
Helix 22
AC4
A
334 352Right-handed alpha
Helix 23
AC5
A
369 381Right-handed alpha
Helix 24
AC6
A
388 403Right-handed alpha
Helix 25
AC7
A
406 421Right-handed alpha
Helix 26
AC8
A
422 437Right-handed alpha
Helix 27
AC9
A
440 454Right-handed alpha
Helix 28
AD1
A
456 465Right-handed alpha
Helix 29
AD2
A
474 483Right-handed alpha
Helix 30
AD3
A
485 499Right-handed alpha
Helix 31
AD4
A
501 522Right-handed alpha
Helix 32
AD5
A
525 534Right-handed alpha
Helix 33
AD6
A
535 548Right-handed alpha
Helix 34
AD7
A
549 551Right-handed 310
Helix 35
AD8
A
552 572Right-handed alpha
Helix 36
AD9
A
644 649Right-handed alpha
Helix 37
AE1
A
652 668Right-handed alpha
Helix 38
AE2
A
671 685Right-handed alpha
Helix 39
AE3
A
687 702Right-handed alpha
Helix 40
AE4
A
705 722Right-handed alpha
Helix 41
AE5
A
727 739Right-handed alpha
Helix 42
AE6
B
7 9Right-handed 310
Helix 43
AE7
B
10 22Right-handed alpha
Helix 44
AE8
B
27 38Right-handed alpha
Helix 45
AE9
B
89 92Right-handed 310
Helix 46
AF1
B
95 113Right-handed alpha
Helix 47
AF2
B
126 134Right-handed alpha
Helix 48
AF3
B
161 175Right-handed alpha
Helix 49
AF4
C
32 42Right-handed alpha
Helix 50
AF5
C
58 69Right-handed alpha
Helix 51
AF6
C
85 97Right-handed alpha
Helix 52
AF7
C
99 110Right-handed alpha
Helix 53
AF8
C
113 122Right-handed alpha
Helix 54
AF9
D
6 22Right-handed alpha
Helix 55
AG1
D
24 39Right-handed alpha
Helix 56
AG2
D
42 55Right-handed alpha
Helix 57
AG3
D
58 73Right-handed alpha
Helix 58
AG4
D
76 90Right-handed alpha
Helix 59
AG5
D
92 106Right-handed alpha
Helix 60
AG6
D
110 124Right-handed alpha
Helix 61
AG7
D
126 141Right-handed alpha
Helix 62
AG8
D
145 159Right-handed alpha
Helix 63
AG9
D
160 173Right-handed alpha
Helix 64
AH1
D
183 200Right-handed alpha
Helix 65
AH2
D
202 214Right-handed alpha
Helix 66
AH3
D
219 234Right-handed alpha
Helix 67
AH4
D
236 251Right-handed alpha
Helix 68
AH5
D
254 265Right-handed alpha
Helix 69
AH6
D
271 286Right-handed alpha
Helix 70
AH7
D
290 295Right-handed alpha
Helix 71
AH8
D
296 298Right-handed 310
Helix 72
AH9
D
301 320Right-handed alpha
Helix 73
AI1
D
323 329Right-handed alpha
Helix 74
AI2
D
330 333Right-handed 310
Helix 75
AI3
D
334 351Right-handed alpha
Helix 76
AI4
D
369 381Right-handed alpha
Helix 77
AI5
D
388 403Right-handed alpha
Helix 78
AI6
D
406 421Right-handed alpha
Helix 79
AI7
D
422 436Right-handed alpha
Helix 80
AI8
D
440 454Right-handed alpha
Helix 81
AI9
D
456 465Right-handed alpha
Helix 82
AJ1
D
474 483Right-handed alpha
Helix 83
AJ2
D
485 499Right-handed alpha
Helix 84
AJ3
D
501 522Right-handed alpha
Helix 85
AJ4
D
525 534Right-handed alpha
Helix 86
AJ5
D
535 548Right-handed alpha
Helix 87
AJ6
D
549 551Right-handed 310
Helix 88
AJ7
D
552 572Right-handed alpha
Helix 89
AJ8
D
644 649Right-handed alpha
Helix 90
AJ9
D
652 668Right-handed alpha
Helix 91
AK1
D
671 685Right-handed alpha
Helix 92
AK2
D
687 702Right-handed alpha
Helix 93
AK3
D
705 722Right-handed alpha
Helix 94
AK4
D
727 739Right-handed alpha
Helix 95
AK5
E
7 9Right-handed 310
Helix 96
AK6
E
10 22Right-handed alpha
Helix 97
AK7
E
27 38Right-handed alpha
Helix 98
AK8
E
89 92Right-handed 310
Helix 99
AK9
E
95 113Right-handed alpha
Helix 100
AL1
E
125 135Right-handed alpha
Helix 101
AL2
E
161 179Right-handed alpha
Helix 102
AL3
F
33 41Right-handed alpha
Helix 103
AL4
F
58 69Right-handed alpha
Helix 104
AL5
F
85 97Right-handed alpha
Helix 105
AL6
F
99 110Right-handed alpha
Helix 106
AL7
F
113 122Right-handed alpha
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There are 2 sheets in PDB entry 5NNR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
79 87anti-parallel
Strand 5
B
116 122parallel
Strand 6
B
154 160anti-parallel
Strand 7
B
139 144anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
43 46anti-parallel
Strand 3
E
61 69anti-parallel
Strand 4
E
80 87anti-parallel
Strand 5
E
116 122parallel
Strand 6
E
154 160anti-parallel
Strand 7
E
139 144anti-parallel
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