Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NNU entry

There are 16 chains in PDB entry 5NNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 A 1 T 5
S
 A 7 T 11
A
 ASP 24GLN 258
B
 ASP 27GLN 258
D
 ASP 27LEU 256
E
 ASP 27LEU 256
T
 A 22 T 32
U
 A 1 T 5
U
 A 7 T 11
V
 A 22 T 32
W
 A 1 T 5
W
 A 7 T 11
X
 A 22 T 32
Y
 A 1 T 5
Y
 A 7 T 11
Z
 A 22 T 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5NNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed 310
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
41 62Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
72 78Right-handed alpha
Helix 6
AA6
A
112 126Right-handed alpha
Helix 7
AA7
A
137 143Right-handed alpha
Helix 8
AA8
A
167 182Right-handed alpha
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
197 201Right-handed 310
Helix 11
AB2
A
215 220Right-handed 310
Helix 12
AB3
A
234 246Right-handed alpha
Helix 13
AB4
B
31 39Right-handed alpha
Helix 14
AB5
B
41 62Right-handed alpha
Helix 15
AB6
B
67 71Right-handed 310
Helix 16
AB7
B
72 78Right-handed alpha
Helix 17
AB8
B
112 126Right-handed alpha
Helix 18
AB9
B
137 143Right-handed alpha
Helix 19
AC1
B
167 182Right-handed alpha
Helix 20
AC2
B
191 196Right-handed alpha
Helix 21
AC3
B
197 201Right-handed 310
Helix 22
AC4
B
215 220Right-handed 310
Helix 23
AC5
B
234 246Right-handed alpha
Helix 24
AC6
D
31 39Right-handed alpha
Helix 25
AC7
D
41 62Right-handed alpha
Helix 26
AC8
D
67 71Right-handed 310
Helix 27
AC9
D
72 78Right-handed alpha
Helix 28
AD1
D
112 126Right-handed alpha
Helix 29
AD2
D
137 143Right-handed alpha
Helix 30
AD3
D
167 182Right-handed alpha
Helix 31
AD4
D
191 196Right-handed alpha
Helix 32
AD5
D
197 201Right-handed 310
Helix 33
AD6
D
215 220Right-handed 310
Helix 34
AD7
D
234 246Right-handed alpha
Helix 35
AD8
E
31 39Right-handed alpha
Helix 36
AD9
E
41 62Right-handed alpha
Helix 37
AE1
E
67 71Right-handed 310
Helix 38
AE2
E
72 78Right-handed alpha
Helix 39
AE3
E
79 83Right-handed 310
Helix 40
AE4
E
112 126Right-handed alpha
Helix 41
AE5
E
137 143Right-handed alpha
Helix 42
AE6
E
167 182Right-handed alpha
Helix 43
AE7
E
191 196Right-handed alpha
Helix 44
AE8
E
197 201Right-handed 310
Helix 45
AE9
E
215 220Right-handed 310
Helix 46
AF1
E
234 246Right-handed alpha
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There are 8 sheets in PDB entry 5NNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
154 155anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
85 89parallel
Strand 3
A
186 190parallel
Strand 4
A
207 211parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
154 155anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
85 89parallel
Strand 3
B
186 190parallel
Strand 4
B
207 211parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
154 155anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 149first strand
Strand 2
D
85 89parallel
Strand 3
D
186 190parallel
Strand 4
D
207 211parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 65first strand
Strand 2
E
154 155anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 149first strand
Strand 2
E
85 89parallel
Strand 3
E
186 190parallel
Strand 4
E
207 211parallel
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