Analysis of interatomic Contacts of Structural Units in PDB entry:
5NNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NNY entry

There are 2 chains in PDB entry 5NNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24ASP 331
B
 MET 25ASN 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5NNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 47Right-handed alpha
Helix 2
AA2
A
53 65Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
78 83Right-handed 310
Helix 5
AA5
A
85 102Right-handed alpha
Helix 6
AA6
A
126 140Right-handed alpha
Helix 7
AA7
A
149 161Right-handed alpha
Helix 8
AA8
A
171 176Right-handed alpha
Helix 9
AA9
A
180 192Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
208 210Right-handed 310
Helix 12
AB3
A
235 247Right-handed alpha
Helix 13
AB4
A
254 275Right-handed alpha
Helix 14
AB5
A
277 282Right-handed 310
Helix 15
AB6
A
283 293Right-handed alpha
Helix 16
AB7
A
298 300Right-handed 310
Helix 17
AB8
A
301 309Right-handed alpha
Helix 18
AB9
B
36 47Right-handed alpha
Helix 19
AC1
B
53 65Right-handed alpha
Helix 20
AC2
B
66 70Right-handed 310
Helix 21
AC3
B
78 83Right-handed 310
Helix 22
AC4
B
85 102Right-handed alpha
Helix 23
AC5
B
126 140Right-handed alpha
Helix 24
AC6
B
149 161Right-handed alpha
Helix 25
AC7
B
180 192Right-handed alpha
Helix 26
AC8
B
196 207Right-handed alpha
Helix 27
AC9
B
208 210Right-handed 310
Helix 28
AD1
B
221 223Right-handed 310
Helix 29
AD2
B
235 246Right-handed alpha
Helix 30
AD3
B
254 276Right-handed alpha
Helix 31
AD4
B
277 282Right-handed 310
Helix 32
AD5
B
283 293Right-handed alpha
Helix 33
AD6
B
298 300Right-handed 310
Helix 34
AD7
B
301 309Right-handed alpha
Helix 35
AD8
B
334 338Right-handed 310
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There are 6 sheets in PDB entry 5NNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
112 115parallel
Strand 3
A
143 147parallel
Strand 4
A
212 213parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
105 106anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
225 230anti-parallel
Strand 3
A
323 328parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
112 115parallel
Strand 3
B
143 147parallel
Strand 4
B
212 213parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
105 106anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 220first strand
Strand 2
B
225 230anti-parallel
Strand 3
B
323 328parallel
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