Analysis of interatomic Contacts of Structural Units in PDB entry:
5NO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NO7 entry

There are 2 chains in PDB entry 5NO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1GLU 278
B
 HIS 1PRO 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5NO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
39 42Right-handed 310
Helix 3
AA3
A
68 78Right-handed 310
Helix 4
AA4
A
94 99Right-handed 310
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
118 122Right-handed 310
Helix 7
AA7
A
205 209Right-handed 310
Helix 8
AA8
A
214 218Right-handed 310
Helix 9
AA9
A
247 251Right-handed 310
Helix 10
AB1
A
269 271Right-handed 310
Helix 11
AB2
A
272 278Right-handed alpha
Helix 12
AB3
B
33 38Right-handed alpha
Helix 13
AB4
B
39 42Right-handed 310
Helix 14
AB5
B
68 78Right-handed 310
Helix 15
AB6
B
94 99Right-handed 310
Helix 16
AB7
B
102 106Right-handed 310
Helix 17
AB8
B
118 122Right-handed 310
Helix 18
AB9
B
205 209Right-handed 310
Helix 19
AC1
B
214 218Right-handed 310
Helix 20
AC2
B
247 251Right-handed 310
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There are 4 sheets in PDB entry 5NO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
141 145anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
176 185parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
109 114anti-parallel
Strand 5
A
128 133anti-parallel
Strand 6
A
255 256anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
60 66anti-parallel
Strand 3
B
141 145anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
176 185parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
109 114anti-parallel
Strand 5
B
128 133anti-parallel
Strand 6
B
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il