Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NOE entry

There are 4 chains in PDB entry 5NOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 325
B
 MET 1SER 325
C
 MET 1SER 325
D
 MET 1LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 5NOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
46 61Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
112 120Right-handed alpha
Helix 7
AA7
A
127 139Right-handed alpha
Helix 8
AA8
A
144 149Right-handed alpha
Helix 9
AA9
A
150 153Right-handed 310
Helix 10
AB1
A
154 163Right-handed alpha
Helix 11
AB2
A
167 172Right-handed alpha
Helix 12
AB3
A
173 175Right-handed 310
Helix 13
AB4
A
189 191Right-handed 310
Helix 14
AB5
A
192 204Right-handed alpha
Helix 15
AB6
A
240 245Right-handed 310
Helix 16
AB7
A
256 269Right-handed alpha
Helix 17
AB8
A
273 291Right-handed alpha
Helix 18
AB9
A
296 307Right-handed alpha
Helix 19
AC1
A
309 325Right-handed alpha
Helix 20
AC2
B
2 9Right-handed alpha
Helix 21
AC3
B
14 27Right-handed alpha
Helix 22
AC4
B
29 44Right-handed alpha
Helix 23
AC5
B
46 61Right-handed alpha
Helix 24
AC6
B
84 95Right-handed alpha
Helix 25
AC7
B
112 120Right-handed alpha
Helix 26
AC8
B
127 139Right-handed alpha
Helix 27
AC9
B
144 149Right-handed alpha
Helix 28
AD1
B
150 154Right-handed 310
Helix 29
AD2
B
155 163Right-handed alpha
Helix 30
AD3
B
166 170Right-handed 310
Helix 31
AD4
B
171 175Right-handed 310
Helix 32
AD5
B
189 191Right-handed 310
Helix 33
AD6
B
192 204Right-handed alpha
Helix 34
AD7
B
240 245Right-handed 310
Helix 35
AD8
B
256 269Right-handed alpha
Helix 36
AD9
B
273 292Right-handed alpha
Helix 37
AE1
B
296 306Right-handed alpha
Helix 38
AE2
B
308 325Right-handed alpha
Helix 39
AE3
C
2 9Right-handed alpha
Helix 40
AE4
C
14 27Right-handed alpha
Helix 41
AE5
C
29 44Right-handed alpha
Helix 42
AE6
C
46 61Right-handed alpha
Helix 43
AE7
C
84 94Right-handed alpha
Helix 44
AE8
C
111 120Right-handed alpha
Helix 45
AE9
C
127 139Right-handed alpha
Helix 46
AF1
C
145 149Right-handed alpha
Helix 47
AF2
C
150 153Right-handed 310
Helix 48
AF3
C
154 163Right-handed alpha
Helix 49
AF4
C
166 172Right-handed alpha
Helix 50
AF5
C
173 175Right-handed 310
Helix 51
AF6
C
189 191Right-handed 310
Helix 52
AF7
C
192 204Right-handed alpha
Helix 53
AF8
C
240 245Right-handed 310
Helix 54
AF9
C
256 269Right-handed alpha
Helix 55
AG1
C
273 291Right-handed alpha
Helix 56
AG2
C
296 308Right-handed alpha
Helix 57
AG3
C
309 325Right-handed alpha
Helix 58
AG4
D
2 9Right-handed alpha
Helix 59
AG5
D
14 27Right-handed alpha
Helix 60
AG6
D
29 44Right-handed alpha
Helix 61
AG7
D
46 61Right-handed alpha
Helix 62
AG8
D
84 94Right-handed alpha
Helix 63
AG9
D
112 120Right-handed alpha
Helix 64
AH1
D
127 139Right-handed alpha
Helix 65
AH2
D
144 149Right-handed alpha
Helix 66
AH3
D
150 153Right-handed 310
Helix 67
AH4
D
154 163Right-handed alpha
Helix 68
AH5
D
166 170Right-handed 310
Helix 69
AH6
D
171 175Right-handed 310
Helix 70
AH7
D
189 191Right-handed 310
Helix 71
AH8
D
192 203Right-handed alpha
Helix 72
AH9
D
240 245Right-handed 310
Helix 73
AI1
D
256 269Right-handed alpha
Helix 74
AI2
D
273 291Right-handed alpha
Helix 75
AI3
D
296 308Right-handed alpha
Helix 76
AI4
D
309 324Right-handed alpha
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There are 8 sheets in PDB entry 5NOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
182 186parallel
Strand 3
A
207 213parallel
Strand 4
A
225 230anti-parallel
Strand 5
A
234 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
140 143parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
182 186parallel
Strand 3
B
207 213parallel
Strand 4
B
225 230anti-parallel
Strand 5
B
234 239anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
140 143parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
182 186parallel
Strand 3
C
207 213parallel
Strand 4
C
225 230anti-parallel
Strand 5
C
234 239anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 103first strand
Strand 2
C
140 144parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 74first strand
Strand 2
D
182 186parallel
Strand 3
D
207 213parallel
Strand 4
D
225 230anti-parallel
Strand 5
D
234 239anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 102first strand
Strand 2
D
140 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il