Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NOF entry

There are 2 chains in PDB entry 5NOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 325
B
 MET 1SER 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5NOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
46 60Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
112 120Right-handed alpha
Helix 7
AA7
A
127 139Right-handed alpha
Helix 8
AA8
A
144 149Right-handed alpha
Helix 9
AA9
A
150 153Right-handed 310
Helix 10
AB1
A
154 163Right-handed alpha
Helix 11
AB2
A
166 172Right-handed alpha
Helix 12
AB3
A
189 191Right-handed 310
Helix 13
AB4
A
192 203Right-handed alpha
Helix 14
AB5
A
240 245Right-handed 310
Helix 15
AB6
A
256 269Right-handed alpha
Helix 16
AB7
A
273 291Right-handed alpha
Helix 17
AB8
A
296 308Right-handed alpha
Helix 18
AB9
A
309 325Right-handed alpha
Helix 19
AC1
B
2 9Right-handed alpha
Helix 20
AC2
B
14 27Right-handed alpha
Helix 21
AC3
B
29 44Right-handed alpha
Helix 22
AC4
B
46 61Right-handed alpha
Helix 23
AC5
B
84 94Right-handed alpha
Helix 24
AC6
B
112 120Right-handed alpha
Helix 25
AC7
B
127 139Right-handed alpha
Helix 26
AC8
B
144 149Right-handed alpha
Helix 27
AC9
B
150 153Right-handed 310
Helix 28
AD1
B
154 163Right-handed alpha
Helix 29
AD2
B
166 172Right-handed alpha
Helix 30
AD3
B
189 191Right-handed 310
Helix 31
AD4
B
192 203Right-handed alpha
Helix 32
AD5
B
240 245Right-handed 310
Helix 33
AD6
B
256 269Right-handed alpha
Helix 34
AD7
B
273 291Right-handed alpha
Helix 35
AD8
B
296 308Right-handed alpha
Helix 36
AD9
B
309 325Right-handed alpha
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There are 4 sheets in PDB entry 5NOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
182 186parallel
Strand 3
A
207 212parallel
Strand 4
A
225 230anti-parallel
Strand 5
A
234 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
140 143parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
182 186parallel
Strand 3
B
207 212parallel
Strand 4
B
225 230anti-parallel
Strand 5
B
234 239anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
140 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il