Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NOG entry

There are 12 chains in PDB entry 5NOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	HIS 371
B	THR 5	GLU 72
B	GLY 74	HIS 371
C	THR 5	GLU 72
C	GLY 74	HIS 371
D	THR 5	GLU 72
D	GLY 74	HIS 371
E	THR 5	GLU 72
E	GLY 74	HIS 371
F	UNK 62	UNK 196
G	UNK 62	UNK 196

There are 90 helices in PDB entry 5NOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	112	123	Right-handed alpha
Helix 4	AA4	A	136	141	Right-handed alpha
Helix 5	AA5	A	172	175	Right-handed 310
Helix 6	AA6	A	182	194	Right-handed alpha
Helix 7	AA7	A	195	197	Right-handed 310
Helix 8	AA8	A	202	206	Right-handed 310
Helix 9	AA9	A	207	214	Right-handed alpha
Helix 10	AB1	A	223	229	Right-handed alpha
Helix 11	AB2	A	257	262	Right-handed 310
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	286	290	Right-handed 310
Helix 14	AB5	A	312	321	Right-handed alpha
Helix 15	AB6	A	337	347	Right-handed alpha
Helix 16	AB7	A	352	356	Right-handed 310
Helix 17	AB8	A	359	366	Right-handed alpha
Helix 18	AB9	B	83	91	Right-handed alpha
Helix 19	AC1	B	112	123	Right-handed alpha
Helix 20	AC2	B	136	141	Right-handed alpha
Helix 21	AC3	B	172	175	Right-handed 310
Helix 22	AC4	B	182	194	Right-handed alpha
Helix 23	AC5	B	195	197	Right-handed 310
Helix 24	AC6	B	202	206	Right-handed 310
Helix 25	AC7	B	207	214	Right-handed alpha
Helix 26	AC8	B	223	228	Right-handed alpha
Helix 27	AC9	B	258	263	Right-handed alpha
Helix 28	AD1	B	273	285	Right-handed alpha
Helix 29	AD2	B	286	290	Right-handed 310
Helix 30	AD3	B	312	321	Right-handed alpha
Helix 31	AD4	B	337	347	Right-handed alpha
Helix 32	AD5	B	352	356	Right-handed 310
Helix 33	AD6	B	359	365	Right-handed alpha
Helix 34	AD7	C	56	60	Right-handed 310
Helix 35	AD8	C	78	83	Right-handed alpha
Helix 36	AD9	C	83	88	Right-handed alpha
Helix 37	AE1	C	118	123	Right-handed alpha
Helix 38	AE2	C	136	141	Right-handed alpha
Helix 39	AE3	C	171	175	Right-handed 310
Helix 40	AE4	C	182	194	Right-handed alpha
Helix 41	AE5	C	195	197	Right-handed 310
Helix 42	AE6	C	202	204	Right-handed 310
Helix 43	AE7	C	205	214	Right-handed alpha
Helix 44	AE8	C	223	228	Right-handed alpha
Helix 45	AE9	C	258	263	Right-handed alpha
Helix 46	AF1	C	264	267	Right-handed 310
Helix 47	AF2	C	273	284	Right-handed alpha
Helix 48	AF3	C	287	292	Right-handed 310
Helix 49	AF4	C	312	321	Right-handed alpha
Helix 50	AF5	C	337	347	Right-handed alpha
Helix 51	AF6	C	351	355	Right-handed 310
Helix 52	AF7	C	359	363	Right-handed alpha
Helix 53	AF8	D	83	88	Right-handed alpha
Helix 54	AF9	D	112	123	Right-handed alpha
Helix 55	AG1	D	136	141	Right-handed alpha
Helix 56	AG2	D	172	175	Right-handed 310
Helix 57	AG3	D	182	194	Right-handed alpha
Helix 58	AG4	D	195	197	Right-handed 310
Helix 59	AG5	D	202	206	Right-handed 310
Helix 60	AG6	D	207	214	Right-handed alpha
Helix 61	AG7	D	257	262	Right-handed 310
Helix 62	AG8	D	273	284	Right-handed alpha
Helix 63	AG9	D	286	290	Right-handed 310
Helix 64	AH1	D	315	321	Right-handed alpha
Helix 65	AH2	D	334	336	Right-handed 310
Helix 66	AH3	D	337	347	Right-handed alpha
Helix 67	AH4	D	348	349	Right-handed 310
Helix 68	AH5	D	350	356	Right-handed 310
Helix 69	AH6	D	358	362	Right-handed 310
Helix 70	AH7	D	366	370	Right-handed 310
Helix 71	AH8	E	56	60	Right-handed 310
Helix 72	AH9	E	83	88	Right-handed alpha
Helix 73	AI1	E	112	123	Right-handed alpha
Helix 74	AI2	E	136	141	Right-handed alpha
Helix 75	AI3	E	172	175	Right-handed 310
Helix 76	AI4	E	181	194	Right-handed alpha
Helix 77	AI5	E	195	197	Right-handed 310
Helix 78	AI6	E	202	206	Right-handed 310
Helix 79	AI7	E	207	214	Right-handed alpha
Helix 80	AI8	E	222	227	Right-handed alpha
Helix 81	AI9	E	257	262	Right-handed 310
Helix 82	AJ1	E	263	268	Right-handed 310
Helix 83	AJ2	E	273	284	Right-handed alpha
Helix 84	AJ3	E	287	291	Right-handed 310
Helix 85	AJ4	E	312	321	Right-handed alpha
Helix 86	AJ5	E	337	347	Right-handed alpha
Helix 87	AJ6	E	352	356	Right-handed 310
Helix 88	AJ7	E	359	365	Right-handed alpha
Helix 89	AJ8	F	63	196	Right-handed alpha
Helix 90	AJ9	G	63	196	Right-handed alpha

There are 27 sheets in PDB entry 5NOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	104	parallel
Strand 5	A	131	133	parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	53	54	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	163	anti-parallel
Strand 3	A	152	154	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	169	170	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	104	parallel
Strand 5	B	131	133	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	152	154	anti-parallel
Strand 3	B	297	300	parallel
Strand 4	B	329	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	169	170	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	104	parallel
Strand 5	C	131	133	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	152	154	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	8	12	anti-parallel
Strand 3	D	103	104	parallel
Strand 4	D	132	133	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	65	66	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	247	249	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	11	anti-parallel
Strand 4	E	103	104	parallel
Strand 5	E	131	133	parallel
Strand 6	E	357	358	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	53	54	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	149	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOG