Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NOL entry

There are 7 chains in PDB entry 5NOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	HIS 371
B	THR 5	HIS 371
C	THR 5	HIS 371
D	THR 5	HIS 371
E	THR 5	HIS 371
F	UNK 97	UNK 231
G	UNK 97	UNK 231

There are117 helices in PDB entry 5NOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	93	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	171	175	Right-handed 310
Helix 7	AA7	A	181	194	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	232	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	285	Right-handed alpha
Helix 15	AB6	A	286	288	Right-handed 310
Helix 16	AB7	A	289	296	Right-handed alpha
Helix 17	AB8	A	301	305	Right-handed 310
Helix 18	AB9	A	308	321	Right-handed alpha
Helix 19	AC1	A	334	336	Right-handed 310
Helix 20	AC2	A	337	348	Right-handed alpha
Helix 21	AC3	A	351	356	Right-handed 310
Helix 22	AC4	A	359	366	Right-handed alpha
Helix 23	AC5	A	367	370	Right-handed 310
Helix 24	AC6	B	55	61	Right-handed alpha
Helix 25	AC7	B	78	93	Right-handed alpha
Helix 26	AC8	B	97	101	Right-handed 310
Helix 27	AC9	B	112	126	Right-handed alpha
Helix 28	AD1	B	137	146	Right-handed alpha
Helix 29	AD2	B	171	175	Right-handed 310
Helix 30	AD3	B	181	194	Right-handed alpha
Helix 31	AD4	B	195	197	Right-handed 310
Helix 32	AD5	B	202	217	Right-handed alpha
Helix 33	AD6	B	222	232	Right-handed alpha
Helix 34	AD7	B	252	257	Right-handed alpha
Helix 35	AD8	B	258	262	Right-handed 310
Helix 36	AD9	B	263	268	Right-handed 310
Helix 37	AE1	B	273	285	Right-handed alpha
Helix 38	AE2	B	286	288	Right-handed 310
Helix 39	AE3	B	289	296	Right-handed alpha
Helix 40	AE4	B	301	305	Right-handed 310
Helix 41	AE5	B	308	321	Right-handed alpha
Helix 42	AE6	B	334	336	Right-handed 310
Helix 43	AE7	B	337	348	Right-handed alpha
Helix 44	AE8	B	351	356	Right-handed 310
Helix 45	AE9	B	359	366	Right-handed alpha
Helix 46	AF1	B	367	370	Right-handed 310
Helix 47	AF2	C	55	61	Right-handed alpha
Helix 48	AF3	C	78	93	Right-handed alpha
Helix 49	AF4	C	97	101	Right-handed 310
Helix 50	AF5	C	112	126	Right-handed alpha
Helix 51	AF6	C	137	146	Right-handed alpha
Helix 52	AF7	C	171	175	Right-handed 310
Helix 53	AF8	C	181	194	Right-handed alpha
Helix 54	AF9	C	195	197	Right-handed 310
Helix 55	AG1	C	202	217	Right-handed alpha
Helix 56	AG2	C	222	232	Right-handed alpha
Helix 57	AG3	C	252	257	Right-handed alpha
Helix 58	AG4	C	258	262	Right-handed 310
Helix 59	AG5	C	263	268	Right-handed 310
Helix 60	AG6	C	273	285	Right-handed alpha
Helix 61	AG7	C	286	288	Right-handed 310
Helix 62	AG8	C	289	296	Right-handed alpha
Helix 63	AG9	C	301	305	Right-handed 310
Helix 64	AH1	C	308	321	Right-handed alpha
Helix 65	AH2	C	334	336	Right-handed 310
Helix 66	AH3	C	337	348	Right-handed alpha
Helix 67	AH4	C	351	356	Right-handed 310
Helix 68	AH5	C	359	366	Right-handed alpha
Helix 69	AH6	C	367	370	Right-handed 310
Helix 70	AH7	D	55	61	Right-handed alpha
Helix 71	AH8	D	78	93	Right-handed alpha
Helix 72	AH9	D	97	101	Right-handed 310
Helix 73	AI1	D	112	126	Right-handed alpha
Helix 74	AI2	D	137	146	Right-handed alpha
Helix 75	AI3	D	171	175	Right-handed 310
Helix 76	AI4	D	181	194	Right-handed alpha
Helix 77	AI5	D	195	197	Right-handed 310
Helix 78	AI6	D	202	217	Right-handed alpha
Helix 79	AI7	D	222	232	Right-handed alpha
Helix 80	AI8	D	252	257	Right-handed alpha
Helix 81	AI9	D	258	262	Right-handed 310
Helix 82	AJ1	D	263	268	Right-handed 310
Helix 83	AJ2	D	273	285	Right-handed alpha
Helix 84	AJ3	D	286	288	Right-handed 310
Helix 85	AJ4	D	289	296	Right-handed alpha
Helix 86	AJ5	D	301	305	Right-handed 310
Helix 87	AJ6	D	308	321	Right-handed alpha
Helix 88	AJ7	D	334	336	Right-handed 310
Helix 89	AJ8	D	337	348	Right-handed alpha
Helix 90	AJ9	D	351	356	Right-handed 310
Helix 91	AK1	D	359	366	Right-handed alpha
Helix 92	AK2	D	367	370	Right-handed 310
Helix 93	AK3	E	55	61	Right-handed alpha
Helix 94	AK4	E	78	93	Right-handed alpha
Helix 95	AK5	E	97	101	Right-handed 310
Helix 96	AK6	E	112	126	Right-handed alpha
Helix 97	AK7	E	137	146	Right-handed alpha
Helix 98	AK8	E	171	175	Right-handed 310
Helix 99	AK9	E	181	194	Right-handed alpha
Helix 100	AL1	E	195	197	Right-handed 310
Helix 101	AL2	E	202	217	Right-handed alpha
Helix 102	AL3	E	222	232	Right-handed alpha
Helix 103	AL4	E	252	257	Right-handed alpha
Helix 104	AL5	E	258	262	Right-handed 310
Helix 105	AL6	E	263	268	Right-handed 310
Helix 106	AL7	E	273	285	Right-handed alpha
Helix 107	AL8	E	286	288	Right-handed 310
Helix 108	AL9	E	289	296	Right-handed alpha
Helix 109	AM1	E	301	305	Right-handed 310
Helix 110	AM2	E	308	321	Right-handed alpha
Helix 111	AM3	E	334	336	Right-handed 310
Helix 112	AM4	E	337	348	Right-handed alpha
Helix 113	AM5	E	351	356	Right-handed 310
Helix 114	AM6	E	359	366	Right-handed alpha
Helix 115	AM7	E	367	370	Right-handed 310
Helix 116	AM8	F	98	231	Right-handed alpha
Helix 117	AM9	G	98	231	Right-handed alpha

There are 25 sheets in PDB entry 5NOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	65	66	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	65	66	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	165	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	65	66	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	65	66	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	160	165	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NOL