Analysis of interatomic Contacts of Structural Units in PDB entry:
5NP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NP0 entry

There are 2 chains in PDB entry 5NP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 3VAL 3056
B
LEU 3VAL 3056
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are334 helices in PDB entry 5NP0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
58 58Right-handed 310
Helix 5
AA5
A
59 78Right-handed alpha
Helix 6
AA6
A
93 111Right-handed alpha
Helix 7
AA7
A
116 125Right-handed alpha
Helix 8
AA8
A
145 154Right-handed alpha
Helix 9
AA9
A
155 162Right-handed alpha
Helix 10
AB1
A
167 177Right-handed alpha
Helix 11
AB2
A
182 198Right-handed alpha
Helix 12
AB3
A
204 206Right-handed 310
Helix 13
AB4
A
207 220Right-handed alpha
Helix 14
AB5
A
223 228Right-handed alpha
Helix 15
AB6
A
230 237Right-handed alpha
Helix 16
AB7
A
242 249Right-handed alpha
Helix 17
AB8
A
250 256Right-handed 310
Helix 18
AB9
A
267 276Right-handed alpha
Helix 19
AC1
A
278 288Right-handed alpha
Helix 20
AC2
A
309 323Right-handed alpha
Helix 21
AC3
A
338 343Right-handed 310
Helix 22
AC4
A
344 356Right-handed alpha
Helix 23
AC5
A
412 420Right-handed alpha
Helix 24
AC6
A
433 440Right-handed alpha
Helix 25
AC7
A
443 449Right-handed alpha
Helix 26
AC8
A
454 458Right-handed 310
Helix 27
AC9
A
459 467Right-handed alpha
Helix 28
AD1
A
477 492Right-handed alpha
Helix 29
AD2
A
498 506Right-handed alpha
Helix 30
AD3
A
506 515Right-handed alpha
Helix 31
AD4
A
522 533Right-handed alpha
Helix 32
AD5
A
539 546Right-handed alpha
Helix 33
AD6
A
559 567Right-handed alpha
Helix 34
AD7
A
578 588Right-handed alpha
Helix 35
AD8
A
603 607Right-handed 310
Helix 36
AD9
A
608 618Right-handed alpha
Helix 37
AE1
A
625 638Right-handed alpha
Helix 38
AE2
A
651 661Right-handed alpha
Helix 39
AE3
A
685 699Right-handed alpha
Helix 40
AE4
A
699 707Right-handed alpha
Helix 41
AE5
A
711 722Right-handed alpha
Helix 42
AE6
A
731 739Right-handed alpha
Helix 43
AE7
A
745 759Right-handed alpha
Helix 44
AE8
A
826 834Right-handed alpha
Helix 45
AE9
A
843 860Right-handed alpha
Helix 46
AF1
A
876 883Right-handed alpha
Helix 47
AF2
A
884 890Right-handed alpha
Helix 48
AF3
A
921 933Right-handed alpha
Helix 49
AF4
A
944 959Right-handed alpha
Helix 50
AF5
A
969 982Right-handed alpha
Helix 51
AF6
A
988 1003Right-handed alpha
Helix 52
AF7
A
1013 1021Right-handed alpha
Helix 53
AF8
A
1042 1052Right-handed alpha
Helix 54
AF9
A
1056 1060Right-handed 310
Helix 55
AG1
A
1061 1068Right-handed alpha
Helix 56
AG2
A
1070 1090Right-handed alpha
Helix 57
AG3
A
1105 1115Right-handed alpha
Helix 58
AG4
A
1115 1126Right-handed alpha
Helix 59
AG5
A
1132 1143Right-handed alpha
Helix 60
AG6
A
1149 1161Right-handed alpha
Helix 61
AG7
A
1164 1177Right-handed alpha
Helix 62
AG8
A
1191 1196Right-handed alpha
Helix 63
AG9
A
1197 1202Right-handed alpha
Helix 64
AH1
A
1211 1218Right-handed alpha
Helix 65
AH2
A
1219 1222Right-handed 310
Helix 66
AH3
A
1237 1247Right-handed alpha
Helix 67
AH4
A
1249 1271Right-handed alpha
Helix 68
AH5
A
1277 1287Right-handed alpha
Helix 69
AH6
A
1288 1291Right-handed 310
Helix 70
AH7
A
1293 1299Right-handed alpha
Helix 71
AH8
A
1307 1312Right-handed alpha
Helix 72
AH9
A
1342 1347Right-handed alpha
Helix 73
AI1
A
1366 1373Right-handed alpha
Helix 74
AI2
A
1379 1388Right-handed alpha
Helix 75
AI3
A
1411 1420Right-handed alpha
Helix 76
AI4
A
1425 1431Right-handed alpha
Helix 77
AI5
A
1436 1448Right-handed alpha
Helix 78
AI6
A
1451 1455Right-handed 310
Helix 79
AI7
A
1456 1473Right-handed alpha
Helix 80
AI8
A
1477 1501Right-handed alpha
Helix 81
AI9
A
1514 1522Right-handed alpha
Helix 82
AJ1
A
1532 1545Right-handed alpha
Helix 83
AJ2
A
1549 1563Right-handed alpha
Helix 84
AJ3
A
1568 1576Right-handed alpha
Helix 85
AJ4
A
1576 1586Right-handed alpha
Helix 86
AJ5
A
1593 1604Right-handed alpha
Helix 87
AJ6
A
1609 1619Right-handed alpha
Helix 88
AJ7
A
1620 1622Right-handed 310
Helix 89
AJ8
A
1630 1638Right-handed alpha
Helix 90
AJ9
A
1643 1650Right-handed alpha
Helix 91
AK1
A
1651 1653Right-handed 310
Helix 92
AK2
A
1658 1669Right-handed alpha
Helix 93
AK3
A
1677 1683Right-handed alpha
Helix 94
AK4
A
1684 1686Right-handed 310
Helix 95
AK5
A
1701 1708Right-handed alpha
Helix 96
AK6
A
1712 1726Right-handed alpha
Helix 97
AK7
A
1735 1744Right-handed alpha
Helix 98
AK8
A
1745 1756Right-handed alpha
Helix 99
AK9
A
1759 1769Right-handed alpha
Helix 100
AL1
A
1811 1816Right-handed alpha
Helix 101
AL2
A
1823 1836Right-handed alpha
Helix 102
AL3
A
1841 1854Right-handed alpha
Helix 103
AL4
A
1855 1874Right-handed alpha
Helix 104
AL5
A
1876 1893Right-handed alpha
Helix 105
AL6
A
1894 1897Right-handed 310
Helix 106
AL7
A
1901 1915Right-handed alpha
Helix 107
AL8
A
1916 1920Right-handed 310
Helix 108
AL9
A
1925 1934Right-handed alpha
Helix 109
AM1
A
1937 1949Right-handed alpha
Helix 110
AM2
A
1950 1976Right-handed alpha
Helix 111
AM3
A
1998 2013Right-handed alpha
Helix 112
AM4
A
2014 2019Right-handed alpha
Helix 113
AM5
A
2021 2025Right-handed 310
Helix 114
AM6
A
2029 2039Right-handed alpha
Helix 115
AM7
A
2041 2052Right-handed alpha
Helix 116
AM8
A
2057 2073Right-handed alpha
Helix 117
AM9
A
2074 2084Right-handed alpha
Helix 118
AN1
A
2091 2106Right-handed alpha
Helix 119
AN2
A
2109 2114Right-handed alpha
Helix 120
AN3
A
2124 2137Right-handed alpha
Helix 121
AN4
A
2142 2161Right-handed alpha
Helix 122
AN5
A
2168 2186Right-handed alpha
Helix 123
AN6
A
2186 2191Right-handed alpha
Helix 124
AN7
A
2195 2212Right-handed alpha
Helix 125
AN8
A
2216 2237Right-handed alpha
Helix 126
AN9
A
2238 2240Right-handed 310
Helix 127
AO1
A
2241 2266Right-handed alpha
Helix 128
AO2
A
2268 2281Right-handed alpha
Helix 129
AO3
A
2282 2285Right-handed 310
Helix 130
AO4
A
2289 2302Right-handed alpha
Helix 131
AO5
A
2307 2324Right-handed alpha
Helix 132
AO6
A
2329 2349Right-handed alpha
Helix 133
AO7
A
2352 2370Right-handed alpha
Helix 134
AO8
A
2377 2420Right-handed alpha
Helix 135
AO9
A
2437 2442Right-handed alpha
Helix 136
AP1
A
2444 2460Right-handed alpha
Helix 137
AP2
A
2461 2477Right-handed alpha
Helix 138
AP3
A
2480 2495Right-handed alpha
Helix 139
AP4
A
2499 2508Right-handed alpha
Helix 140
AP5
A
2509 2511Right-handed 310
Helix 141
AP6
A
2512 2517Right-handed alpha
Helix 142
AP7
A
2519 2524Right-handed alpha
Helix 143
AP8
A
2525 2527Right-handed 310
Helix 144
AP9
A
2537 2551Right-handed alpha
Helix 145
AQ1
A
2552 2566Right-handed alpha
Helix 146
AQ2
A
2596 2613Right-handed alpha
Helix 147
AQ3
A
2618 2633Right-handed alpha
Helix 148
AQ4
A
2653 2661Right-handed alpha
Helix 149
AQ5
A
2721 2742Right-handed alpha
Helix 150
AQ6
A
2742 2749Right-handed alpha
Helix 151
AQ7
A
2775 2784Right-handed alpha
Helix 152
AQ8
A
2793 2802Right-handed alpha
Helix 153
AQ9
A
2803 2805Right-handed 310
Helix 154
AR1
A
2806 2806Right-handed alpha
Helix 155
AR2
A
2814 2827Right-handed alpha
Helix 156
AR3
A
2830 2839Right-handed alpha
Helix 157
AR4
A
2841 2861Right-handed alpha
Helix 158
AR5
A
2861 2867Right-handed alpha
Helix 159
AR6
A
2910 2918Right-handed alpha
Helix 160
AR7
A
2922 2925Right-handed 310
Helix 161
AR8
A
2926 2954Right-handed alpha
Helix 162
AR9
A
2965 2973Right-handed alpha
Helix 163
AS1
A
2974 2981Right-handed alpha
Helix 164
AS2
A
2999 3017Right-handed alpha
Helix 165
AS3
A
3028 3041Right-handed alpha
Helix 166
AS4
A
3041 3047Right-handed alpha
Helix 167
AS5
A
3049 3054Right-handed alpha
Helix 168
AS6
B
5 16Right-handed alpha
Helix 169
AS7
B
21 35Right-handed alpha
Helix 170
AS8
B
41 45Right-handed 310
Helix 171
AS9
B
58 58Right-handed 310
Helix 172
AT1
B
59 78Right-handed alpha
Helix 173
AT2
B
93 111Right-handed alpha
Helix 174
AT3
B
116 125Right-handed alpha
Helix 175
AT4
B
145 154Right-handed alpha
Helix 176
AT5
B
155 162Right-handed alpha
Helix 177
AT6
B
167 177Right-handed alpha
Helix 178
AT7
B
182 198Right-handed alpha
Helix 179
AT8
B
204 206Right-handed 310
Helix 180
AT9
B
207 220Right-handed alpha
Helix 181
AU1
B
223 228Right-handed alpha
Helix 182
AU2
B
230 237Right-handed alpha
Helix 183
AU3
B
242 249Right-handed alpha
Helix 184
AU4
B
250 256Right-handed 310
Helix 185
AU5
B
267 276Right-handed alpha
Helix 186
AU6
B
278 288Right-handed alpha
Helix 187
AU7
B
309 323Right-handed alpha
Helix 188
AU8
B
338 343Right-handed 310
Helix 189
AU9
B
344 356Right-handed alpha
Helix 190
AV1
B
412 420Right-handed alpha
Helix 191
AV2
B
433 440Right-handed alpha
Helix 192
AV3
B
443 449Right-handed alpha
Helix 193
AV4
B
454 458Right-handed 310
Helix 194
AV5
B
459 467Right-handed alpha
Helix 195
AV6
B
477 492Right-handed alpha
Helix 196
AV7
B
498 506Right-handed alpha
Helix 197
AV8
B
506 515Right-handed alpha
Helix 198
AV9
B
522 533Right-handed alpha
Helix 199
AW1
B
539 546Right-handed alpha
Helix 200
AW2
B
559 567Right-handed alpha
Helix 201
AW3
B
578 588Right-handed alpha
Helix 202
AW4
B
603 607Right-handed 310
Helix 203
AW5
B
608 618Right-handed alpha
Helix 204
AW6
B
625 638Right-handed alpha
Helix 205
AW7
B
651 661Right-handed alpha
Helix 206
AW8
B
685 699Right-handed alpha
Helix 207
AW9
B
699 707Right-handed alpha
Helix 208
AX1
B
711 722Right-handed alpha
Helix 209
AX2
B
731 739Right-handed alpha
Helix 210
AX3
B
745 759Right-handed alpha
Helix 211
AX4
B
826 834Right-handed alpha
Helix 212
AX5
B
843 860Right-handed alpha
Helix 213
AX6
B
876 883Right-handed alpha
Helix 214
AX7
B
884 890Right-handed alpha
Helix 215
AX8
B
921 933Right-handed alpha
Helix 216
AX9
B
944 959Right-handed alpha
Helix 217
AY1
B
969 982Right-handed alpha
Helix 218
AY2
B
988 1003Right-handed alpha
Helix 219
AY3
B
1013 1021Right-handed alpha
Helix 220
AY4
B
1042 1052Right-handed alpha
Helix 221
AY5
B
1056 1060Right-handed 310
Helix 222
AY6
B
1061 1068Right-handed alpha
Helix 223
AY7
B
1070 1090Right-handed alpha
Helix 224
AY8
B
1105 1115Right-handed alpha
Helix 225
AY9
B
1115 1126Right-handed alpha
Helix 226
AZ1
B
1132 1143Right-handed alpha
Helix 227
AZ2
B
1149 1161Right-handed alpha
Helix 228
AZ3
B
1164 1177Right-handed alpha
Helix 229
AZ4
B
1191 1196Right-handed alpha
Helix 230
AZ5
B
1197 1202Right-handed alpha
Helix 231
AZ6
B
1211 1218Right-handed alpha
Helix 232
AZ7
B
1219 1222Right-handed 310
Helix 233
AZ8
B
1237 1247Right-handed alpha
Helix 234
AZ9
B
1249 1271Right-handed alpha
Helix 235
BA1
B
1277 1287Right-handed alpha
Helix 236
BA2
B
1288 1291Right-handed 310
Helix 237
BA3
B
1293 1299Right-handed alpha
Helix 238
BA4
B
1307 1312Right-handed alpha
Helix 239
BA5
B
1342 1347Right-handed alpha
Helix 240
BA6
B
1366 1373Right-handed alpha
Helix 241
BA7
B
1379 1388Right-handed alpha
Helix 242
BA8
B
1411 1420Right-handed alpha
Helix 243
BA9
B
1425 1431Right-handed alpha
Helix 244
BB1
B
1436 1448Right-handed alpha
Helix 245
BB2
B
1451 1455Right-handed 310
Helix 246
BB3
B
1456 1473Right-handed alpha
Helix 247
BB4
B
1477 1501Right-handed alpha
Helix 248
BB5
B
1514 1522Right-handed alpha
Helix 249
BB6
B
1532 1545Right-handed alpha
Helix 250
BB7
B
1549 1563Right-handed alpha
Helix 251
BB8
B
1568 1576Right-handed alpha
Helix 252
BB9
B
1576 1586Right-handed alpha
Helix 253
BC1
B
1593 1604Right-handed alpha
Helix 254
BC2
B
1609 1619Right-handed alpha
Helix 255
BC3
B
1620 1622Right-handed 310
Helix 256
BC4
B
1630 1638Right-handed alpha
Helix 257
BC5
B
1643 1650Right-handed alpha
Helix 258
BC6
B
1651 1653Right-handed 310
Helix 259
BC7
B
1658 1669Right-handed alpha
Helix 260
BC8
B
1677 1683Right-handed alpha
Helix 261
BC9
B
1684 1686Right-handed 310
Helix 262
BD1
B
1701 1708Right-handed alpha
Helix 263
BD2
B
1712 1726Right-handed alpha
Helix 264
BD3
B
1735 1744Right-handed alpha
Helix 265
BD4
B
1745 1756Right-handed alpha
Helix 266
BD5
B
1759 1769Right-handed alpha
Helix 267
BD6
B
1811 1816Right-handed alpha
Helix 268
BD7
B
1823 1836Right-handed alpha
Helix 269
BD8
B
1841 1854Right-handed alpha
Helix 270
BD9
B
1855 1874Right-handed alpha
Helix 271
BE1
B
1876 1893Right-handed alpha
Helix 272
BE2
B
1894 1897Right-handed 310
Helix 273
BE3
B
1901 1915Right-handed alpha
Helix 274
BE4
B
1916 1920Right-handed 310
Helix 275
BE5
B
1925 1934Right-handed alpha
Helix 276
BE6
B
1937 1949Right-handed alpha
Helix 277
BE7
B
1950 1976Right-handed alpha
Helix 278
BE8
B
1998 2013Right-handed alpha
Helix 279
BE9
B
2014 2019Right-handed alpha
Helix 280
BF1
B
2021 2025Right-handed 310
Helix 281
BF2
B
2029 2039Right-handed alpha
Helix 282
BF3
B
2041 2052Right-handed alpha
Helix 283
BF4
B
2057 2073Right-handed alpha
Helix 284
BF5
B
2074 2084Right-handed alpha
Helix 285
BF6
B
2091 2106Right-handed alpha
Helix 286
BF7
B
2109 2114Right-handed alpha
Helix 287
BF8
B
2124 2137Right-handed alpha
Helix 288
BF9
B
2142 2161Right-handed alpha
Helix 289
BG1
B
2168 2186Right-handed alpha
Helix 290
BG2
B
2186 2191Right-handed alpha
Helix 291
BG3
B
2195 2212Right-handed alpha
Helix 292
BG4
B
2216 2237Right-handed alpha
Helix 293
BG5
B
2238 2240Right-handed 310
Helix 294
BG6
B
2241 2266Right-handed alpha
Helix 295
BG7
B
2268 2281Right-handed alpha
Helix 296
BG8
B
2282 2285Right-handed 310
Helix 297
BG9
B
2289 2302Right-handed alpha
Helix 298
BH1
B
2307 2324Right-handed alpha
Helix 299
BH2
B
2329 2349Right-handed alpha
Helix 300
BH3
B
2352 2370Right-handed alpha
Helix 301
BH4
B
2377 2420Right-handed alpha
Helix 302
BH5
B
2437 2442Right-handed alpha
Helix 303
BH6
B
2444 2460Right-handed alpha
Helix 304
BH7
B
2461 2477Right-handed alpha
Helix 305
BH8
B
2480 2495Right-handed alpha
Helix 306
BH9
B
2499 2508Right-handed alpha
Helix 307
BI1
B
2509 2511Right-handed 310
Helix 308
BI2
B
2512 2517Right-handed alpha
Helix 309
BI3
B
2519 2524Right-handed alpha
Helix 310
BI4
B
2525 2527Right-handed 310
Helix 311
BI5
B
2537 2551Right-handed alpha
Helix 312
BI6
B
2552 2566Right-handed alpha
Helix 313
BI7
B
2596 2613Right-handed alpha
Helix 314
BI8
B
2618 2633Right-handed alpha
Helix 315
BI9
B
2653 2661Right-handed alpha
Helix 316
BJ1
B
2721 2742Right-handed alpha
Helix 317
BJ2
B
2742 2749Right-handed alpha
Helix 318
BJ3
B
2775 2784Right-handed alpha
Helix 319
BJ4
B
2793 2802Right-handed alpha
Helix 320
BJ5
B
2803 2805Right-handed 310
Helix 321
BJ6
B
2806 2806Right-handed alpha
Helix 322
BJ7
B
2814 2827Right-handed alpha
Helix 323
BJ8
B
2830 2839Right-handed alpha
Helix 324
BJ9
B
2841 2861Right-handed alpha
Helix 325
BK1
B
2861 2867Right-handed alpha
Helix 326
BK2
B
2910 2918Right-handed alpha
Helix 327
BK3
B
2922 2925Right-handed 310
Helix 328
BK4
B
2926 2954Right-handed alpha
Helix 329
BK5
B
2965 2973Right-handed alpha
Helix 330
BK6
B
2974 2981Right-handed alpha
Helix 331
BK7
B
2999 3017Right-handed alpha
Helix 332
BK8
B
3028 3041Right-handed alpha
Helix 333
BK9
B
3041 3047Right-handed alpha
Helix 334
BL1
B
3049 3054Right-handed alpha
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There are 4 sheets in PDB entry 5NP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2702 2705first strand
Strand 2
A
2711 2714anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2757 2761first strand
Strand 2
A
2764 2767anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2702 2705first strand
Strand 2
B
2711 2714anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2757 2761first strand
Strand 2
B
2764 2767anti-parallel
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