Analysis of interatomic Contacts of Structural Units in PDB entry:
5NP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NP8 entry

There is 1 chain in PDB entry 5NP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ILE 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5NP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
37 53Right-handed alpha
Helix 3
AA3
A
78 90Right-handed alpha
Helix 4
AA4
A
101 110Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
143 156Right-handed alpha
Helix 7
AA7
A
165 169Right-handed 310
Helix 8
AA8
A
173 178Right-handed alpha
Helix 9
AA9
A
187 203Right-handed alpha
Helix 10
AB1
A
217 219Right-handed 310
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
240 250Right-handed alpha
Helix 13
AB4
A
259 264Right-handed alpha
Helix 14
AB5
A
265 277Right-handed alpha
Helix 15
AB6
A
317 331Right-handed alpha
Helix 16
AB7
A
345 348Right-handed 310
Helix 17
AB8
A
349 365Right-handed alpha
Helix 18
AB9
A
384 389Right-handed alpha
Helix 19
AC1
A
395 404Right-handed alpha
Helix 20
AC2
A
408 413Right-handed alpha
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There are 5 sheets in PDB entry 5NP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
115 119parallel
Strand 3
A
57 61parallel
Strand 4
A
18 22parallel
Strand 5
A
160 163parallel
Strand 6
A
184 186parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
33 34anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
139 141anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
233 236parallel
Strand 3
A
208 212parallel
Strand 4
A
333 337parallel
Strand 5
A
368 371parallel
Strand 6
A
391 392parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
312 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il