Analysis of interatomic Contacts of Structural Units in PDB entry:
5NP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NP9 entry

There is 1 chain in PDB entry 5NP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 5NP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
108 115Right-handed 310
Helix 6
AA6
A
140 154Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5NP9.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
29 34parallel
Strand 5
A
102 106parallel
Strand 6
A
76 80parallel
Strand 7
A
66 69anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il