Analysis of interatomic Contacts of Structural Units in PDB entry:
5NPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NPS entry

There are 2 chains in PDB entry 5NPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 314ILE 1027
D
 VAL 2ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5NPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
314 331Right-handed alpha
Helix 2
AA2
A
332 347Right-handed alpha
Helix 3
AA3
A
350 364Right-handed alpha
Helix 4
AA4
A
366 381Right-handed alpha
Helix 5
AA5
A
384 398Right-handed alpha
Helix 6
AA6
A
400 415Right-handed alpha
Helix 7
AA7
A
418 433Right-handed alpha
Helix 8
AA8
A
434 449Right-handed alpha
Helix 9
AA9
A
452 466Right-handed alpha
Helix 10
AB1
A
471 489Right-handed alpha
Helix 11
AB2
A
499 503Right-handed 310
Helix 12
AB3
A
506 526Right-handed alpha
Helix 13
AB4
A
558 565Right-handed alpha
Helix 14
AB5
A
566 571Right-handed alpha
Helix 15
AB6
A
589 599Right-handed alpha
Helix 16
AB7
A
606 608Right-handed 310
Helix 17
AB8
A
610 622Right-handed alpha
Helix 18
AB9
A
638 643Right-handed alpha
Helix 19
AC1
A
675 682Right-handed 310
Helix 20
AC2
A
697 702Right-handed alpha
Helix 21
AC3
A
703 706Right-handed 310
Helix 22
AC4
A
730 737Right-handed alpha
Helix 23
AC5
A
770 783Right-handed alpha
Helix 24
AC6
A
799 804Right-handed alpha
Helix 25
AC7
A
804 809Right-handed alpha
Helix 26
AC8
A
823 826Right-handed 310
Helix 27
AC9
A
839 843Right-handed 310
Helix 28
AD1
A
844 858Right-handed alpha
Helix 29
AD2
A
869 871Right-handed 310
Helix 30
AD3
A
872 883Right-handed alpha
Helix 31
AD4
A
897 905Right-handed alpha
Helix 32
AD5
A
906 908Right-handed 310
Helix 33
AD6
A
920 929Right-handed alpha
Helix 34
AD7
A
940 943Right-handed 310
Helix 35
AD8
A
944 954Right-handed alpha
Helix 36
AD9
A
955 959Right-handed 310
Helix 37
AE1
A
962 976Right-handed alpha
Helix 38
AE2
A
976 994Right-handed alpha
Helix 39
AE3
A
998 1019Right-handed alpha
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There are 3 sheets in PDB entry 5NPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 604first strand
Strand 2
A
576 582parallel
Strand 3
A
546 552parallel
Strand 4
A
625 628parallel
Strand 5
A
648 652parallel
Strand 6
A
666 669parallel
Strand 7
A
685 688parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 744first strand
Strand 2
A
764 768anti-parallel
Strand 3
A
709 712parallel
Strand 4
A
724 727anti-parallel
Strand 5
A
817 821anti-parallel
Strand 6
A
792 796parallel
Strand 7
A
786 789anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 894first strand
Strand 2
A
862 867parallel
Strand 3
A
833 835parallel
Strand 4
A
910 912parallel
Strand 5
A
933 934parallel
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