Analysis of interatomic Contacts of Structural Units in PDB entry:
5NPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NPV entry

There are 4 chains in PDB entry 5NPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4PRO 273
B
 ARG 10ASP 47
C
 ASP 4PRO 273
D
 ARG 10LEU 48
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5NPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
44 58Right-handed alpha
Helix 3
AA3
A
82 91Right-handed alpha
Helix 4
AA4
A
117 137Right-handed alpha
Helix 5
AA5
A
146 159Right-handed alpha
Helix 6
AA6
A
161 170Right-handed alpha
Helix 7
AA7
A
171 174Right-handed 310
Helix 8
AA8
A
214 222Right-handed alpha
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
250 258Right-handed alpha
Helix 11
AB2
B
11 29Right-handed alpha
Helix 12
AB3
B
29 46Right-handed alpha
Helix 13
AB4
C
5 13Right-handed alpha
Helix 14
AB5
C
44 54Right-handed alpha
Helix 15
AB6
C
82 91Right-handed alpha
Helix 16
AB7
C
117 137Right-handed alpha
Helix 17
AB8
C
139 145Right-handed alpha
Helix 18
AB9
C
146 159Right-handed alpha
Helix 19
AC1
C
161 173Right-handed alpha
Helix 20
AC2
C
214 223Right-handed alpha
Helix 21
AC3
C
250 258Right-handed alpha
Helix 22
AC4
D
11 28Right-handed alpha
Helix 23
AC5
D
28 47Right-handed alpha
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There are 4 sheets in PDB entry 5NPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
98 103parallel
Strand 4
A
69 72anti-parallel
Strand 5
A
75 76anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
265 270parallel
Strand 4
A
237 239anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
15 21anti-parallel
Strand 3
C
98 105parallel
Strand 4
C
67 71anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 191first strand
Strand 2
C
266 271parallel
Strand 3
C
236 239anti-parallel
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