Analysis of interatomic Contacts of Structural Units in PDB entry:
5NPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NPW entry

There are 5 chains in PDB entry 5NPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	ASP 275
B	GLY 9	LEU 48
C	MET 1	THR 274
D	GLY 8	ASP 47
E	ASP 3	ARG 15

There are 58 helices in PDB entry 5NPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	44	49	Right-handed alpha
Helix 3	AA3	A	49	58	Right-handed alpha
Helix 4	AA4	A	61	65	Right-handed 310
Helix 5	AA5	A	82	90	Right-handed alpha
Helix 6	AA6	A	117	137	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	146	160	Right-handed alpha
Helix 9	AA9	A	161	170	Right-handed alpha
Helix 10	AB1	A	171	174	Right-handed 310
Helix 11	AB2	A	214	223	Right-handed alpha
Helix 12	AB3	A	224	227	Right-handed 310
Helix 13	AB4	A	250	258	Right-handed alpha
Helix 14	AB5	B	11	28	Right-handed alpha
Helix 15	AB6	B	28	48	Right-handed alpha
Helix 16	AB7	C	4	13	Right-handed alpha
Helix 17	AB8	C	44	49	Right-handed alpha
Helix 18	AB9	C	49	58	Right-handed alpha
Helix 19	AC1	C	61	65	Right-handed 310
Helix 20	AC2	C	82	90	Right-handed alpha
Helix 21	AC3	C	117	137	Right-handed alpha
Helix 22	AC4	C	139	144	Right-handed alpha
Helix 23	AC5	C	146	159	Right-handed alpha
Helix 24	AC6	C	161	173	Right-handed alpha
Helix 25	AC7	C	214	223	Right-handed alpha
Helix 26	AC8	C	224	227	Right-handed 310
Helix 27	AC9	C	250	258	Right-handed alpha
Helix 28	AD1	D	11	28	Right-handed alpha
Helix 29	AD2	D	28	47	Right-handed alpha
Helix 30	AD3	E	4	13	Right-handed alpha
Helix 31	AD4	E	44	49	Right-handed alpha
Helix 32	AD5	E	49	58	Right-handed alpha
Helix 33	AD6	E	61	65	Right-handed 310
Helix 34	AD7	E	82	90	Right-handed alpha
Helix 35	AD8	E	117	137	Right-handed alpha
Helix 36	AD9	E	139	144	Right-handed alpha
Helix 37	AE1	E	146	159	Right-handed alpha
Helix 38	AE2	E	161	170	Right-handed alpha
Helix 39	AE3	E	171	174	Right-handed 310
Helix 40	AE4	E	214	223	Right-handed alpha
Helix 41	AE5	E	224	227	Right-handed 310
Helix 42	AE6	E	250	258	Right-handed alpha
Helix 43	AE7	F	11	28	Right-handed alpha
Helix 44	AE8	F	28	47	Right-handed alpha
Helix 45	AE9	G	4	13	Right-handed alpha
Helix 46	AF1	G	44	49	Right-handed alpha
Helix 47	AF2	G	49	58	Right-handed alpha
Helix 48	AF3	G	82	90	Right-handed alpha
Helix 49	AF4	G	117	137	Right-handed alpha
Helix 50	AF5	G	139	144	Right-handed alpha
Helix 51	AF6	G	146	159	Right-handed alpha
Helix 52	AF7	G	161	170	Right-handed alpha
Helix 53	AF8	G	171	174	Right-handed 310
Helix 54	AF9	G	214	223	Right-handed alpha
Helix 55	AG1	G	224	227	Right-handed 310
Helix 56	AG2	G	250	258	Right-handed alpha
Helix 57	AG3	H	11	28	Right-handed alpha
Helix 58	AG4	H	28	48	Right-handed alpha

There are 8 sheets in PDB entry 5NPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	98	103	parallel
Strand 4	A	69	72	anti-parallel
Strand 5	A	75	76	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	265	271	parallel
Strand 3	A	236	239	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	15	22	anti-parallel
Strand 3	C	98	103	parallel
Strand 4	C	69	72	anti-parallel
Strand 5	C	75	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	187	191	anti-parallel
Strand 3	C	265	271	parallel
Strand 4	C	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	15	22	anti-parallel
Strand 3	E	98	103	parallel
Strand 4	E	69	72	anti-parallel
Strand 5	E	75	76	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	191	first strand
Strand 2	E	265	271	parallel
Strand 3	E	236	239	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	15	22	anti-parallel
Strand 3	G	98	103	parallel
Strand 4	G	69	72	anti-parallel
Strand 5	G	75	76	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	191	first strand
Strand 2	G	265	271	parallel
Strand 3	G	236	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NPW