Analysis of interatomic Contacts of Structural Units in PDB entry:
5NPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NPY entry

There is 1 chain in PDB entry 5NPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 81THR 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5NPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 169Right-handed alpha
Helix 2
AA2
A
208 213Right-handed alpha
Helix 3
AA3
A
220 227Right-handed alpha
Helix 4
AA4
A
278 290Right-handed alpha
Helix 5
AA5
A
326 333Right-handed alpha
Helix 6
AA6
A
512 516Right-handed 310
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There are 10 sheets in PDB entry 5NPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
127 130anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
555 559anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
97 100anti-parallel
Strand 6
A
121 123anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
499 505anti-parallel
Strand 6
A
489 494anti-parallel
Strand 7
A
477 484anti-parallel
Strand 8
A
184 185anti-parallel
Strand 9
A
156 157parallel
Strand 10
A
152 153anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 439first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
192 198parallel
Strand 4
A
465 471anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
353 364anti-parallel
Strand 3
A
370 381anti-parallel
Strand 4
A
396 406anti-parallel
Strand 5
A
411 412anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
353 364anti-parallel
Strand 3
A
370 381anti-parallel
Strand 4
A
396 406anti-parallel
Strand 5
A
417 423anti-parallel
Strand 6
A
430 431anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
260 266parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
320 325anti-parallel
Strand 5
A
336 341anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
346 351anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
543 544anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
523 525anti-parallel
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