Analysis of interatomic Contacts of Structural Units in PDB entry:
5NQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NQ8 entry

There is 1 chain in PDB entry 5NQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22LEU 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5NQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 79Right-handed 310
Helix 2
AA2
A
94 98Right-handed 310
Helix 3
AA3
A
135 140Right-handed 310
Helix 4
AA4
A
154 158Right-handed 310
Helix 5
AA5
A
162 164Right-handed 310
Helix 6
AA6
A
291 295Right-handed 310
Helix 7
AA7
A
322 326Right-handed 310
Helix 8
AA8
A
371 378Right-handed alpha
Helix 9
AA9
A
382 386Right-handed 310
Helix 10
AB1
A
474 480Right-handed alpha
Helix 11
AB2
A
489 497Right-handed alpha
Helix 12
AB3
A
500 505Right-handed alpha
Helix 13
AB4
A
505 512Right-handed alpha
Helix 14
AB5
A
514 518Right-handed 310
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There are 7 sheets in PDB entry 5NQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
64 71parallel
Strand 4
A
112 119anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
142 148parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
84 87anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
166 172anti-parallel
Strand 3
A
216 223parallel
Strand 4
A
264 270anti-parallel
Strand 5
A
239 244anti-parallel
Strand 6
A
247 254anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
297 302parallel
Strand 3
A
277 284anti-parallel
Strand 4
A
230 234anti-parallel
Strand 5
A
257 259anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
400 406parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
425 429anti-parallel
Strand 5
A
443 444anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
358 360anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
483 488parallel
Strand 3
A
466 472anti-parallel
Strand 4
A
417 420anti-parallel
Strand 5
A
446 448anti-parallel
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