Analysis of interatomic Contacts of Structural Units in PDB entry:
5NQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NQH entry

There are 4 chains in PDB entry 5NQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 539SER 666
B
 LEU 539ARG 665
C
 LEU 539ASP 663
D
 LEU 539SER 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5NQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
558 571Right-handed alpha
Helix 2
AA2
A
574 578Right-handed 310
Helix 3
AA3
A
643 656Right-handed alpha
Helix 4
AA4
B
558 571Right-handed alpha
Helix 5
AA5
B
643 661Right-handed alpha
Helix 6
AA6
C
558 571Right-handed alpha
Helix 7
AA7
C
643 662Right-handed alpha
Helix 8
AA8
D
558 571Right-handed alpha
Helix 9
AA9
D
643 656Right-handed alpha
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There are 3 sheets in PDB entry 5NQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 605first strand
Strand 2
A
589 594anti-parallel
Strand 3
A
579 585anti-parallel
Strand 4
A
541 552anti-parallel
Strand 5
A
632 639anti-parallel
Strand 6
A
620 626anti-parallel
Strand 7
A
609 614anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
600 605first strand
Strand 2
B
589 594anti-parallel
Strand 3
B
579 585anti-parallel
Strand 4
B
541 553anti-parallel
Strand 5
B
631 639anti-parallel
Strand 6
B
620 627anti-parallel
Strand 7
B
609 614anti-parallel
Strand 8
D
659 663anti-parallel
Strand 9
A
659 663anti-parallel
Strand 10
C
609 614anti-parallel
Strand 11
C
620 626anti-parallel
Strand 12
C
632 639anti-parallel
Strand 13
C
541 553anti-parallel
Strand 14
C
579 585anti-parallel
Strand 15
C
589 594anti-parallel
Strand 16
C
600 605anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
600 605first strand
Strand 2
D
589 594anti-parallel
Strand 3
D
579 585anti-parallel
Strand 4
D
541 553anti-parallel
Strand 5
D
632 638anti-parallel
Strand 6
D
620 625anti-parallel
Strand 7
D
609 614anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il