Analysis of interatomic Contacts of Structural Units in PDB entry:
5NQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NQP entry

There are 3 chains in PDB entry 5NQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 79GLU 322
A
 GLY 72GLU 322
B
 GLY 80LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5NQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
79 87Right-handed alpha
Helix 2
AA2
C
129 133Right-handed 310
Helix 3
AA3
C
205 209Right-handed 310
Helix 4
AA4
C
251 255Right-handed 310
Helix 5
AA5
A
75 79Right-handed 310
Helix 6
AA6
A
80 87Right-handed alpha
Helix 7
AA7
A
129 133Right-handed 310
Helix 8
AA8
A
205 209Right-handed 310
Helix 9
AA9
A
251 255Right-handed 310
Helix 10
AB1
B
81 87Right-handed alpha
Helix 11
AB2
B
129 133Right-handed 310
Helix 12
AB3
B
150 150Right-handed 310
Helix 13
AB4
B
205 209Right-handed 310
Helix 14
AB5
B
251 255Right-handed 310
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There are 9 sheets in PDB entry 5NQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
127 128anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 122first strand
Strand 2
C
109 115anti-parallel
Strand 3
C
138 150anti-parallel
Strand 4
C
150 165anti-parallel
Strand 5
C
169 180anti-parallel
Strand 6
C
188 201anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 223first strand
Strand 2
C
226 236anti-parallel
Strand 3
C
241 247anti-parallel
Strand 4
C
257 265anti-parallel
Strand 5
C
271 278anti-parallel
Strand 6
C
283 292anti-parallel
Strand 7
C
298 307anti-parallel
Strand 8
C
310 320anti-parallel
Strand 9
C
214 223anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
127 128anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
138 150anti-parallel
Strand 4
A
150 165anti-parallel
Strand 5
A
169 180anti-parallel
Strand 6
A
188 201anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 223first strand
Strand 2
A
226 236anti-parallel
Strand 3
A
241 247anti-parallel
Strand 4
A
257 265anti-parallel
Strand 5
A
271 278anti-parallel
Strand 6
A
283 292anti-parallel
Strand 7
A
298 307anti-parallel
Strand 8
A
310 319anti-parallel
Strand 9
A
214 223anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
127 128anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
138 150anti-parallel
Strand 4
B
150 165anti-parallel
Strand 5
B
169 180anti-parallel
Strand 6
B
188 201anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 223first strand
Strand 2
B
226 236anti-parallel
Strand 3
B
241 247anti-parallel
Strand 4
B
257 265anti-parallel
Strand 5
B
271 278anti-parallel
Strand 6
B
283 292anti-parallel
Strand 7
B
298 307anti-parallel
Strand 8
B
310 319anti-parallel
Strand 9
B
214 223anti-parallel
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