Analysis of interatomic Contacts of Structural Units in PDB entry:
5NR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NR4 entry

There are 2 chains in PDB entry 5NR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5SER 229
B
 PHE 10SER 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5NR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
21 35Right-handed alpha
Helix 4
AA4
A
45 62Right-handed alpha
Helix 5
AA5
A
64 83Right-handed alpha
Helix 6
AA6
A
84 88Right-handed 310
Helix 7
AA7
A
89 101Right-handed alpha
Helix 8
AA8
A
105 123Right-handed alpha
Helix 9
AA9
A
125 134Right-handed alpha
Helix 10
AB1
A
135 139Right-handed 310
Helix 11
AB2
A
141 160Right-handed alpha
Helix 12
AB3
A
165 177Right-handed alpha
Helix 13
AB4
A
181 200Right-handed alpha
Helix 14
AB5
A
201 208Right-handed alpha
Helix 15
AB6
A
213 226Right-handed alpha
Helix 16
AB7
B
18 34Right-handed alpha
Helix 17
AB8
B
50 61Right-handed alpha
Helix 18
AB9
B
64 83Right-handed alpha
Helix 19
AC1
B
84 88Right-handed 310
Helix 20
AC2
B
89 101Right-handed alpha
Helix 21
AC3
B
105 123Right-handed alpha
Helix 22
AC4
B
125 134Right-handed alpha
Helix 23
AC5
B
135 139Right-handed 310
Helix 24
AC6
B
141 160Right-handed alpha
Helix 25
AC7
B
165 177Right-handed alpha
Helix 26
AC8
B
181 200Right-handed alpha
Helix 27
AC9
B
202 209Right-handed alpha
Helix 28
AD1
B
213 229Right-handed alpha
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There are no sheets in PDB entry 5NR4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il