Analysis of interatomic Contacts of Structural Units in PDB entry:
5NR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NR9 entry

There are 2 chains in PDB entry 5NR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 82LYS 359
B
 SER 81GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5NR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 89Right-handed alpha
Helix 2
AA2
A
90 94Right-handed 310
Helix 3
AA3
A
114 126Right-handed alpha
Helix 4
AA4
A
139 155Right-handed alpha
Helix 5
AA5
A
169 173Right-handed 310
Helix 6
AA6
A
194 213Right-handed alpha
Helix 7
AA7
A
213 218Right-handed alpha
Helix 8
AA8
A
235 239Right-handed 310
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
287 308Right-handed alpha
Helix 11
AB2
A
315 327Right-handed alpha
Helix 12
AB3
A
335 338Right-handed 310
Helix 13
AB4
A
340 344Right-handed 310
Helix 14
AB5
B
84 89Right-handed alpha
Helix 15
AB6
B
90 94Right-handed 310
Helix 16
AB7
B
114 126Right-handed alpha
Helix 17
AB8
B
137 155Right-handed alpha
Helix 18
AB9
B
169 173Right-handed 310
Helix 19
AC1
B
194 213Right-handed alpha
Helix 20
AC2
B
213 218Right-handed alpha
Helix 21
AC3
B
235 239Right-handed 310
Helix 22
AC4
B
254 258Right-handed 310
Helix 23
AC5
B
287 308Right-handed alpha
Helix 24
AC6
B
315 327Right-handed alpha
Helix 25
AC7
B
335 338Right-handed 310
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There are 4 sheets in PDB entry 5NR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
331 333parallel
Strand 3
A
242 246parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
220 224anti-parallel
Strand 6
A
129 135parallel
Strand 7
A
161 167parallel
Strand 8
A
182 188parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
354 356anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
331 333parallel
Strand 3
B
242 246parallel
Strand 4
B
279 286anti-parallel
Strand 5
B
220 224anti-parallel
Strand 6
B
129 135parallel
Strand 7
B
161 167parallel
Strand 8
B
182 188parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il