Analysis of interatomic Contacts of Structural Units in PDB entry:
5NRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NRF entry

There is 1 chain in PDB entry 5NRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22HIS 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5NRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
72 87Right-handed alpha
Helix 5
AA5
A
103 111Right-handed alpha
Helix 6
AA6
A
112 131Right-handed alpha
Helix 7
AA7
A
150 174Right-handed alpha
Helix 8
AA8
A
187 195Right-handed alpha
Helix 9
AA9
A
196 204Right-handed alpha
Helix 10
AB1
A
235 241Right-handed 310
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
256 258Right-handed 310
Helix 13
AB4
A
303 307Right-handed alpha
Helix 14
AB5
A
336 350Right-handed alpha
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
375 385Right-handed alpha
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There are 3 sheets in PDB entry 5NRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
91 97parallel
Strand 4
A
134 138parallel
Strand 5
A
179 185parallel
Strand 6
A
206 210parallel
Strand 7
A
260 265parallel
Strand 8
A
354 358parallel
Strand 9
A
23 29parallel
Strand 10
A
53 62parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
300 302anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
330 333anti-parallel
Strand 4
A
322 327anti-parallel
Strand 5
A
313 317anti-parallel
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