Analysis of interatomic Contacts of Structural Units in PDB entry:
5NRG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NRG entry

There are 2 chains in PDB entry 5NRG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	U 3	C 2921
Y	U 1	U 1

There are 65 helices in PDB entry 5NRG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	210	214	Right-handed 310
Helix 2	AA2	B	40	45	Right-handed alpha
Helix 3	AA3	B	70	79	Right-handed alpha
Helix 4	AA4	B	106	110	Right-handed 310
Helix 5	AA5	B	129	134	Right-handed alpha
Helix 6	AA6	C	30	44	Right-handed alpha
Helix 7	AA7	C	102	120	Right-handed alpha
Helix 8	AA8	C	134	141	Right-handed alpha
Helix 9	AA9	C	191	201	Right-handed alpha
Helix 10	AB1	D	7	17	Right-handed alpha
Helix 11	AB2	D	24	28	Right-handed 310
Helix 12	AB3	D	47	62	Right-handed alpha
Helix 13	AB4	D	94	102	Right-handed alpha
Helix 14	AB5	D	164	170	Right-handed alpha
Helix 15	AB6	D	171	173	Right-handed 310
Helix 16	AB7	E	63	77	Right-handed alpha
Helix 17	AB8	E	143	150	Right-handed alpha
Helix 18	AB9	G	25	39	Right-handed alpha
Helix 19	AC1	G	59	63	Right-handed 310
Helix 20	AC2	G	90	96	Right-handed alpha
Helix 21	AC3	G	98	108	Right-handed alpha
Helix 22	AC4	G	113	120	Right-handed alpha
Helix 23	AC5	H	104	110	Right-handed alpha
Helix 24	AC6	H	111	118	Right-handed alpha
Helix 25	AC7	I	112	120	Right-handed alpha
Helix 26	AC8	J	44	56	Right-handed alpha
Helix 27	AC9	J	110	123	Right-handed alpha
Helix 28	AD1	K	9	28	Right-handed alpha
Helix 29	AD2	K	34	54	Right-handed alpha
Helix 30	AD3	K	55	63	Right-handed alpha
Helix 31	AD4	K	80	88	Right-handed alpha
Helix 32	AD5	K	88	93	Right-handed alpha
Helix 33	AD6	L	8	20	Right-handed alpha
Helix 34	AD7	L	65	83	Right-handed alpha
Helix 35	AD8	L	100	111	Right-handed alpha
Helix 36	AD9	M	4	10	Right-handed alpha
Helix 37	AE1	M	11	15	Right-handed 310
Helix 38	AE2	M	66	70	Right-handed 310
Helix 39	AE3	M	99	105	Right-handed 310
Helix 40	AE4	N	8	21	Right-handed alpha
Helix 41	AE5	N	25	29	Right-handed 310
Helix 42	AE6	N	31	72	Right-handed alpha
Helix 43	AE7	N	75	86	Right-handed alpha
Helix 44	AE8	N	92	102	Right-handed alpha
Helix 45	AE9	N	102	115	Right-handed alpha
Helix 46	AF1	P	13	25	Right-handed alpha
Helix 47	AF2	P	28	39	Right-handed alpha
Helix 48	AF3	P	42	61	Right-handed alpha
Helix 49	AF4	P	89	91	Right-handed 310
Helix 50	AF5	Q	13	19	Right-handed alpha
Helix 51	AF6	Q	34	44	Right-handed alpha
Helix 52	AF7	S	14	24	Right-handed alpha
Helix 53	AF8	S	45	53	Right-handed alpha
Helix 54	AF9	S	155	159	Right-handed 310
Helix 55	AG1	V	12	34	Right-handed alpha
Helix 56	AG2	V	40	64	Right-handed alpha
Helix 57	AG3	W	16	26	Right-handed alpha
Helix 58	AG4	W	40	50	Right-handed alpha
Helix 59	AG5	Z	9	18	Right-handed alpha
Helix 60	AG6	2	9	18	Right-handed alpha
Helix 61	AG7	2	18	24	Right-handed alpha
Helix 62	AG8	2	25	39	Right-handed alpha
Helix 63	AG9	3	7	12	Right-handed alpha
Helix 64	AH1	3	37	45	Right-handed alpha
Helix 65	AH2	3	51	59	Right-handed alpha

There are 33 sheets in PDB entry 5NRG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	101	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	183	185	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	16	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	195	198	anti-parallel
Strand 4	B	177	188	anti-parallel
Strand 5	B	115	121	anti-parallel
Strand 6	B	208	213	anti-parallel
Strand 7	B	4	16	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	104	105	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	171	172	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	187	189	parallel
Strand 3	C	149	151	parallel
Strand 4	C	168	169	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	84	91	anti-parallel
Strand 3	D	66	69	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	134	135	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	54	58	parallel
Strand 3	G	123	125	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	78	first strand
Strand 2	G	85	89	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	16	24	anti-parallel
Strand 3	H	38	46	anti-parallel
Strand 4	H	57	64	anti-parallel
Strand 5	H	83	86	anti-parallel
Strand 6	H	7	10	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	60	65	anti-parallel
Strand 4	M	48	49	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	120	121	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	67	first strand
Strand 2	I	94	95	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	66	first strand
Strand 2	J	100	106	anti-parallel
Strand 3	J	32	36	anti-parallel
Strand 4	J	131	133	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	43	first strand
Strand 2	J	90	97	anti-parallel
Strand 3	J	72	75	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	115	120	anti-parallel
Strand 3	K	102	108	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	45	first strand
Strand 2	L	30	32	anti-parallel
Strand 3	L	93	94	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	41	45	first strand
Strand 2	M	26	33	anti-parallel
Strand 3	M	85	90	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	6	first strand
Strand 2	O	11	13	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	19	23	first strand
Strand 2	O	91	96	anti-parallel
Strand 3	O	64	67	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	32	35	first strand
Strand 2	O	58	61	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	76	first strand
Strand 2	O	83	86	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	10	first strand
Strand 2	P	93	108	anti-parallel
Strand 3	P	70	87	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	24	28	first strand
Strand 2	Q	75	84	anti-parallel
Strand 3	Q	49	58	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	9	11	first strand
Strand 2	R	21	26	anti-parallel
Strand 3	R	33	36	anti-parallel
Strand 4	R	63	64	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	6	first strand
Strand 2	S	61	65	parallel
Strand 3	S	69	80	anti-parallel
Strand 4	S	85	93	anti-parallel
Strand 5	S	26	33	parallel
Strand 6	S	40	44	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	101	102	first strand
Strand 2	S	130	131	anti-parallel
Strand 3	S	166	167	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	106	107	first strand
Strand 2	S	141	142	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	30	31	first strand
Strand 2	T	44	47	anti-parallel
Strand 3	T	67	69	anti-parallel
Strand 4	T	59	61	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	38	39	first strand
Strand 2	T	73	79	anti-parallel
Strand 3	T	85	90	anti-parallel
Strand 4	T	54	55	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	34	38	first strand
Strand 2	W	3	8	anti-parallel
Strand 3	W	54	56	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	27	29	first strand
Strand 2	Z	37	39	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NRG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NRG