Analysis of interatomic Contacts of Structural Units in PDB entry:
5NRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NRH entry

There are 2 chains in PDB entry 5NRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ASP 312
B
 ILE 4ASP 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5NRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
22 40Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
77 86Right-handed alpha
Helix 6
AA6
A
94 102Right-handed alpha
Helix 7
AA7
A
103 115Right-handed alpha
Helix 8
AA8
A
129 142Right-handed alpha
Helix 9
AA9
A
163 165Right-handed 310
Helix 10
AB1
A
166 178Right-handed alpha
Helix 11
AB2
A
216 222Right-handed alpha
Helix 12
AB3
A
235 253Right-handed alpha
Helix 13
AB4
A
286 294Right-handed alpha
Helix 14
AB5
A
298 309Right-handed alpha
Helix 15
AB6
B
5 9Right-handed 310
Helix 16
AB7
B
22 40Right-handed alpha
Helix 17
AB8
B
55 60Right-handed alpha
Helix 18
AB9
B
71 75Right-handed 310
Helix 19
AC1
B
77 86Right-handed alpha
Helix 20
AC2
B
94 103Right-handed alpha
Helix 21
AC3
B
103 114Right-handed alpha
Helix 22
AC4
B
129 142Right-handed alpha
Helix 23
AC5
B
152 156Right-handed 310
Helix 24
AC6
B
163 165Right-handed 310
Helix 25
AC7
B
166 176Right-handed alpha
Helix 26
AC8
B
216 222Right-handed alpha
Helix 27
AC9
B
235 252Right-handed alpha
Helix 28
AD1
B
286 295Right-handed alpha
Helix 29
AD2
B
298 309Right-handed alpha
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There are 6 sheets in PDB entry 5NRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
11 15parallel
Strand 3
A
64 67parallel
Strand 4
A
89 90parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
145 149anti-parallel
Strand 4
A
159 161anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
189 198anti-parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
271 277anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
11 15parallel
Strand 3
B
64 67parallel
Strand 4
B
89 90parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
180 185anti-parallel
Strand 3
B
145 149anti-parallel
Strand 4
B
159 161anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
271 277anti-parallel
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