Analysis of interatomic Contacts of Structural Units in PDB entry:
5NS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NS1 entry

There is 1 chain in PDB entry 5NS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LEU 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5NS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
41 47Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
79 105Right-handed alpha
Helix 6
AA6
A
114 124Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
142 152Right-handed alpha
Helix 9
AA9
A
182 196Right-handed alpha
Helix 10
AB1
A
205 216Right-handed alpha
Helix 11
AB2
A
238 249Right-handed alpha
Helix 12
AB3
A
257 262Right-handed alpha
Helix 13
AB4
A
264 268Right-handed 310
Helix 14
AB5
A
269 284Right-handed alpha
Helix 15
AB6
A
285 287Right-handed 310
Helix 16
AB7
A
307 309Right-handed 310
Helix 17
AB8
A
310 321Right-handed alpha
Helix 18
AB9
A
324 333Right-handed alpha
Helix 19
AC1
A
333 353Right-handed alpha
Helix 20
AC2
A
367 383Right-handed alpha
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There are 3 sheets in PDB entry 5NS1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
65 69parallel
Strand 3
A
127 134parallel
Strand 4
A
109 111parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
65 69parallel
Strand 3
A
127 134parallel
Strand 4
A
154 158parallel
Strand 5
A
198 200parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
251 254parallel
Strand 3
A
289 291parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il