Analysis of interatomic Contacts of Structural Units in PDB entry:
5NT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NT1 entry

There are 6 chains in PDB entry 5NT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 190SER 362
B
 ALA 86SER 205
E
 SER 190SER 362
F
 ALA 86SER 205
I
 SER 190SER 362
J
 ALA 86ARG 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5NT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
190 299Right-handed alpha
Helix 2
AA2
A
306 312Right-handed alpha
Helix 3
AA3
A
330 357Right-handed alpha
Helix 4
AA4
B
94 100Right-handed alpha
Helix 5
AA5
B
170 187Right-handed alpha
Helix 6
AA6
B
195 203Right-handed alpha
Helix 7
AA7
E
191 299Right-handed alpha
Helix 8
AA8
E
306 312Right-handed alpha
Helix 9
AA9
E
330 357Right-handed alpha
Helix 10
AB1
F
94 100Right-handed alpha
Helix 11
AB2
F
170 187Right-handed alpha
Helix 12
AB3
F
195 203Right-handed alpha
Helix 13
AB4
I
191 299Right-handed alpha
Helix 14
AB5
I
306 312Right-handed alpha
Helix 15
AB6
I
330 357Right-handed alpha
Helix 16
AB7
J
94 100Right-handed alpha
Helix 17
AB8
J
170 187Right-handed alpha
Helix 18
AB9
J
195 203Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5NT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
140 151anti-parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
115 120anti-parallel
Strand 6
B
107 112anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
191 194parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
87 91first strand
Strand 2
F
127 137anti-parallel
Strand 3
F
140 151anti-parallel
Strand 4
F
156 162anti-parallel
Strand 5
F
115 120anti-parallel
Strand 6
F
107 112anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
87 91first strand
Strand 2
F
127 137anti-parallel
Strand 3
F
191 194parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
87 91first strand
Strand 2
J
127 137anti-parallel
Strand 3
J
140 151anti-parallel
Strand 4
J
156 162anti-parallel
Strand 5
J
115 120anti-parallel
Strand 6
J
107 112anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
87 91first strand
Strand 2
J
127 137anti-parallel
Strand 3
J
191 194parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il