Analysis of interatomic Contacts of Structural Units in PDB entry:
5NT2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NT2 entry

There are 8 chains in PDB entry 5NT2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 SER 87PHE 201
C
 SER 87PHE 201
D
 ASN 4TRP 203
E
 PRO 3TRP 203
I
 SER 190SER 362
A
 SER 190SER 362
V
 SER 190SER 362
N
 SER 190GLN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5NT2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
94 100Right-handed alpha
Helix 2
AA2
F
170 187Right-handed alpha
Helix 3
AA3
F
195 201Right-handed alpha
Helix 4
AA4
C
94 99Right-handed alpha
Helix 5
AA5
C
170 187Right-handed alpha
Helix 6
AA6
C
195 201Right-handed alpha
Helix 7
AA7
D
6 26Right-handed alpha
Helix 8
AA8
D
29 51Right-handed alpha
Helix 9
AA9
D
53 65Right-handed alpha
Helix 10
AB1
D
94 100Right-handed alpha
Helix 11
AB2
D
170 187Right-handed alpha
Helix 12
AB3
D
195 201Right-handed alpha
Helix 13
AB4
E
6 26Right-handed alpha
Helix 14
AB5
E
29 51Right-handed alpha
Helix 15
AB6
E
53 66Right-handed alpha
Helix 16
AB7
E
94 100Right-handed alpha
Helix 17
AB8
E
170 187Right-handed alpha
Helix 18
AB9
E
195 201Right-handed alpha
Helix 19
AC1
I
191 299Right-handed alpha
Helix 20
AC2
I
304 312Right-handed alpha
Helix 21
AC3
I
330 357Right-handed alpha
Helix 22
AC4
A
191 297Right-handed alpha
Helix 23
AC5
A
305 312Right-handed alpha
Helix 24
AC6
A
330 357Right-handed alpha
Helix 25
AC7
V
191 299Right-handed alpha
Helix 26
AC8
V
305 317Right-handed alpha
Helix 27
AC9
V
330 357Right-handed alpha
Helix 28
AD1
N
191 297Right-handed alpha
Helix 29
AD2
N
305 312Right-handed alpha
Helix 30
AD3
N
330 357Right-handed alpha
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There are 8 sheets in PDB entry 5NT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
88 91first strand
Strand 2
F
127 137anti-parallel
Strand 3
F
140 150anti-parallel
Strand 4
F
156 162anti-parallel
Strand 5
F
115 120anti-parallel
Strand 6
F
107 112anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
88 91first strand
Strand 2
F
127 137anti-parallel
Strand 3
F
191 194parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
127 137anti-parallel
Strand 3
C
140 150anti-parallel
Strand 4
C
156 162anti-parallel
Strand 5
C
115 120anti-parallel
Strand 6
C
107 112anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
127 137anti-parallel
Strand 3
C
191 194parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 91first strand
Strand 2
D
127 137anti-parallel
Strand 3
D
140 150anti-parallel
Strand 4
D
156 162anti-parallel
Strand 5
D
115 120anti-parallel
Strand 6
D
107 112anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 91first strand
Strand 2
D
127 137anti-parallel
Strand 3
D
191 194parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 91first strand
Strand 2
E
127 137anti-parallel
Strand 3
E
140 150anti-parallel
Strand 4
E
156 162anti-parallel
Strand 5
E
115 120anti-parallel
Strand 6
E
107 112anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 91first strand
Strand 2
E
127 137anti-parallel
Strand 3
E
191 194parallel
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