Analysis of interatomic Contacts of Structural Units in PDB entry:
5NT7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NT7 entry

There are 4 chains in PDB entry 5NT7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 465CYS 623
A
 TYR 146GLU 237
C
 TYR 146GLU 237
D
 VAL 465CYS 623
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5NT7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
473 475Right-handed 310
Helix 2
AA2
B
476 488Right-handed alpha
Helix 3
AA3
B
498 512Right-handed alpha
Helix 4
AA4
B
524 537Right-handed alpha
Helix 5
AA5
B
547 551Right-handed alpha
Helix 6
AA6
B
569 578Right-handed alpha
Helix 7
AA7
B
598 600Right-handed 310
Helix 8
AA8
B
601 612Right-handed alpha
Helix 9
AA9
B
617 621Right-handed 310
Helix 10
AB1
A
147 153Right-handed alpha
Helix 11
AB2
A
155 167Right-handed alpha
Helix 12
AB3
A
173 186Right-handed alpha
Helix 13
AB4
A
194 200Right-handed alpha
Helix 14
AB5
A
225 234Right-handed alpha
Helix 15
AB6
C
147 153Right-handed alpha
Helix 16
AB7
C
155 167Right-handed alpha
Helix 17
AB8
C
173 186Right-handed alpha
Helix 18
AB9
C
194 200Right-handed alpha
Helix 19
AC1
C
225 234Right-handed alpha
Helix 20
AC2
D
473 475Right-handed 310
Helix 21
AC3
D
476 488Right-handed alpha
Helix 22
AC4
D
498 512Right-handed alpha
Helix 23
AC5
D
524 537Right-handed alpha
Helix 24
AC6
D
569 578Right-handed alpha
Helix 25
AC7
D
598 600Right-handed 310
Helix 26
AC8
D
601 612Right-handed alpha
Helix 27
AC9
D
617 622Right-handed alpha
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There are 3 sheets in PDB entry 5NT7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 471first strand
Strand 2
B
588 593parallel
Strand 3
B
560 563parallel
Strand 4
B
492 496parallel
Strand 5
B
542 546parallel
Strand 6
B
516 519parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
205 209anti-parallel
Strand 3
C
205 209anti-parallel
Strand 4
C
215 219anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
466 471first strand
Strand 2
D
588 593parallel
Strand 3
D
560 563parallel
Strand 4
D
492 496parallel
Strand 5
D
542 546parallel
Strand 6
D
516 519parallel
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