Analysis of interatomic Contacts of Structural Units in PDB entry:
5NTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NTF entry

There are 2 chains in PDB entry 5NTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10ARG 521
B
 SER 10ARG 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5NTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
31 38Right-handed alpha
Helix 3
AA3
A
53 57Right-handed alpha
Helix 4
AA4
A
58 64Right-handed 310
Helix 5
AA5
A
68 78Right-handed alpha
Helix 6
AA6
A
119 131Right-handed alpha
Helix 7
AA7
A
132 134Right-handed 310
Helix 8
AA8
A
149 160Right-handed alpha
Helix 9
AA9
A
167 174Right-handed 310
Helix 10
AB1
A
194 214Right-handed alpha
Helix 11
AB2
A
220 236Right-handed alpha
Helix 12
AB3
A
244 250Right-handed alpha
Helix 13
AB4
A
252 260Right-handed alpha
Helix 14
AB5
A
301 306Right-handed alpha
Helix 15
AB6
A
307 311Right-handed 310
Helix 16
AB7
A
312 328Right-handed alpha
Helix 17
AB8
A
372 387Right-handed alpha
Helix 18
AB9
A
403 410Right-handed alpha
Helix 19
AC1
A
420 435Right-handed alpha
Helix 20
AC2
A
444 449Right-handed alpha
Helix 21
AC3
A
450 453Right-handed 310
Helix 22
AC4
A
469 480Right-handed alpha
Helix 23
AC5
A
509 519Right-handed alpha
Helix 24
AC6
B
11 21Right-handed alpha
Helix 25
AC7
B
31 38Right-handed alpha
Helix 26
AC8
B
53 57Right-handed alpha
Helix 27
AC9
B
58 64Right-handed 310
Helix 28
AD1
B
68 78Right-handed alpha
Helix 29
AD2
B
119 131Right-handed alpha
Helix 30
AD3
B
132 134Right-handed 310
Helix 31
AD4
B
149 160Right-handed alpha
Helix 32
AD5
B
167 175Right-handed 310
Helix 33
AD6
B
194 214Right-handed alpha
Helix 34
AD7
B
220 236Right-handed alpha
Helix 35
AD8
B
244 250Right-handed alpha
Helix 36
AD9
B
252 260Right-handed alpha
Helix 37
AE1
B
301 306Right-handed alpha
Helix 38
AE2
B
307 311Right-handed 310
Helix 39
AE3
B
312 328Right-handed alpha
Helix 40
AE4
B
372 387Right-handed alpha
Helix 41
AE5
B
403 410Right-handed alpha
Helix 42
AE6
B
420 435Right-handed alpha
Helix 43
AE7
B
444 449Right-handed alpha
Helix 44
AE8
B
450 453Right-handed 310
Helix 45
AE9
B
469 480Right-handed alpha
Helix 46
AF1
B
509 519Right-handed alpha
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There are 8 sheets in PDB entry 5NTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
181 187parallel
Strand 3
A
139 145parallel
Strand 4
A
46 52parallel
Strand 5
A
99 107parallel
Strand 6
A
83 89anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
332 343anti-parallel
Strand 4
A
281 293parallel
Strand 5
A
394 399parallel
Strand 6
A
489 494parallel
Strand 7
A
414 418anti-parallel
Strand 8
A
438 440parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
363 365anti-parallel
Strand 3
A
459 460parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
504 505anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
181 187parallel
Strand 3
B
139 145parallel
Strand 4
B
46 52parallel
Strand 5
B
99 107parallel
Strand 6
B
83 89anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 243first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
333 343anti-parallel
Strand 4
B
282 293parallel
Strand 5
B
394 399parallel
Strand 6
B
489 494parallel
Strand 7
B
414 418anti-parallel
Strand 8
B
438 440parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
363 365anti-parallel
Strand 3
B
459 460parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 501first strand
Strand 2
B
504 505anti-parallel
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