Analysis of interatomic Contacts of Structural Units in PDB entry:
5NTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NTH entry

There is 1 chain in PDB entry 5NTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3HIS 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5NTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
60 65Right-handed 310
Helix 5
AA5
A
69 79Right-handed alpha
Helix 6
AA6
A
117 129Right-handed alpha
Helix 7
AA7
A
130 132Right-handed 310
Helix 8
AA8
A
148 158Right-handed alpha
Helix 9
AA9
A
166 174Right-handed 310
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
203 223Right-handed alpha
Helix 12
AB3
A
229 245Right-handed alpha
Helix 13
AB4
A
253 259Right-handed alpha
Helix 14
AB5
A
261 269Right-handed alpha
Helix 15
AB6
A
312 317Right-handed alpha
Helix 16
AB7
A
318 322Right-handed 310
Helix 17
AB8
A
323 343Right-handed alpha
Helix 18
AB9
A
391 406Right-handed alpha
Helix 19
AC1
A
422 429Right-handed alpha
Helix 20
AC2
A
439 454Right-handed alpha
Helix 21
AC3
A
463 469Right-handed alpha
Helix 22
AC4
A
488 499Right-handed alpha
Helix 23
AC5
A
528 538Right-handed alpha
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There are 4 sheets in PDB entry 5NTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
182 186parallel
Strand 3
A
138 143parallel
Strand 4
A
47 52parallel
Strand 5
A
98 104parallel
Strand 6
A
84 89anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
350 362anti-parallel
Strand 4
A
292 304parallel
Strand 5
A
413 418parallel
Strand 6
A
509 513parallel
Strand 7
A
433 437anti-parallel
Strand 8
A
457 459parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
382 384anti-parallel
Strand 3
A
478 479parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 520first strand
Strand 2
A
523 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il