Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NUD entry

There are 2 chains in PDB entry 5NUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 453GLU 753
B
 PRO 448VAL 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5NUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
463 465Right-handed 310
Helix 2
AA2
A
510 528Right-handed alpha
Helix 3
AA3
A
557 564Right-handed alpha
Helix 4
AA4
A
585 606Right-handed alpha
Helix 5
AA5
A
614 616Right-handed 310
Helix 6
AA6
A
652 656Right-handed 310
Helix 7
AA7
A
657 662Right-handed alpha
Helix 8
AA8
A
667 684Right-handed alpha
Helix 9
AA9
A
694 696Right-handed 310
Helix 10
AB1
A
697 704Right-handed alpha
Helix 11
AB2
A
715 726Right-handed alpha
Helix 12
AB3
A
729 733Right-handed 310
Helix 13
AB4
A
735 753Right-handed alpha
Helix 14
AB5
B
463 465Right-handed 310
Helix 15
AB6
B
510 528Right-handed alpha
Helix 16
AB7
B
557 565Right-handed alpha
Helix 17
AB8
B
585 606Right-handed alpha
Helix 18
AB9
B
614 616Right-handed 310
Helix 19
AC1
B
652 656Right-handed 310
Helix 20
AC2
B
657 664Right-handed alpha
Helix 21
AC3
B
667 684Right-handed alpha
Helix 22
AC4
B
694 696Right-handed 310
Helix 23
AC5
B
697 704Right-handed alpha
Helix 24
AC6
B
715 726Right-handed alpha
Helix 25
AC7
B
729 733Right-handed 310
Helix 26
AC8
B
735 750Right-handed alpha
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There are 4 sheets in PDB entry 5NUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 474first strand
Strand 2
A
480 487anti-parallel
Strand 3
A
497 504anti-parallel
Strand 4
A
547 551anti-parallel
Strand 5
A
536 540anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
626 628anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 472first strand
Strand 2
B
481 487anti-parallel
Strand 3
B
497 503anti-parallel
Strand 4
B
547 551anti-parallel
Strand 5
B
536 540anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
618 620first strand
Strand 2
B
626 628anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il