Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NUF entry

There are 3 chains in PDB entry 5NUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 332
B
 GLU 4SER 332
C
 ALA 2SER 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5NUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
47 61Right-handed alpha
Helix 4
AA4
A
74 80Right-handed alpha
Helix 5
AA5
A
98 121Right-handed alpha
Helix 6
AA6
A
133 145Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
157 173Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
210 215Right-handed alpha
Helix 11
AB2
A
216 222Right-handed alpha
Helix 12
AB3
A
222 230Right-handed alpha
Helix 13
AB4
A
230 240Right-handed alpha
Helix 14
AB5
A
244 261Right-handed alpha
Helix 15
AB6
A
276 280Right-handed 310
Helix 16
AB7
A
306 331Right-handed alpha
Helix 17
AB8
B
15 27Right-handed alpha
Helix 18
AB9
B
44 46Right-handed 310
Helix 19
AC1
B
47 61Right-handed alpha
Helix 20
AC2
B
74 80Right-handed alpha
Helix 21
AC3
B
98 121Right-handed alpha
Helix 22
AC4
B
133 145Right-handed alpha
Helix 23
AC5
B
149 151Right-handed 310
Helix 24
AC6
B
157 173Right-handed alpha
Helix 25
AC7
B
175 177Right-handed 310
Helix 26
AC8
B
210 215Right-handed alpha
Helix 27
AC9
B
216 222Right-handed alpha
Helix 28
AD1
B
222 240Right-handed alpha
Helix 29
AD2
B
244 261Right-handed alpha
Helix 30
AD3
B
276 280Right-handed 310
Helix 31
AD4
B
306 331Right-handed alpha
Helix 32
AD5
C
15 27Right-handed alpha
Helix 33
AD6
C
44 46Right-handed 310
Helix 34
AD7
C
47 61Right-handed alpha
Helix 35
AD8
C
74 80Right-handed alpha
Helix 36
AD9
C
98 101Right-handed 310
Helix 37
AE1
C
102 121Right-handed alpha
Helix 38
AE2
C
133 145Right-handed alpha
Helix 39
AE3
C
149 151Right-handed 310
Helix 40
AE4
C
157 173Right-handed alpha
Helix 41
AE5
C
175 177Right-handed 310
Helix 42
AE6
C
210 215Right-handed alpha
Helix 43
AE7
C
216 222Right-handed alpha
Helix 44
AE8
C
222 230Right-handed alpha
Helix 45
AE9
C
230 240Right-handed alpha
Helix 46
AF1
C
243 261Right-handed alpha
Helix 47
AF2
C
276 280Right-handed 310
Helix 48
AF3
C
306 331Right-handed alpha
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There are 12 sheets in PDB entry 5NUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
37 42parallel
Strand 3
A
6 11parallel
Strand 4
A
84 87parallel
Strand 5
A
126 129parallel
Strand 6
A
153 155parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
200 203anti-parallel
Strand 3
A
206 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
193 195anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
285 293anti-parallel
Strand 3
A
296 299anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
37 42parallel
Strand 3
B
6 11parallel
Strand 4
B
84 87parallel
Strand 5
B
126 129parallel
Strand 6
B
153 155parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
200 203anti-parallel
Strand 3
B
206 209anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
193 195anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 273first strand
Strand 2
B
285 293anti-parallel
Strand 3
B
296 299anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 72first strand
Strand 2
C
37 42parallel
Strand 3
C
6 11parallel
Strand 4
C
84 87parallel
Strand 5
C
126 129parallel
Strand 6
C
153 155parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
200 203anti-parallel
Strand 3
C
206 209anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 185first strand
Strand 2
C
193 195anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 273first strand
Strand 2
C
285 293anti-parallel
Strand 3
C
296 299anti-parallel
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