Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NUH entry

There are 4 chains in PDB entry 5NUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 103PHE 233
B
 ARG 103PHE 233
C
 ILE 81ARG 135
D
 ASP 80ARG 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5NUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
112 126Right-handed alpha
Helix 2
AA2
A
135 151Right-handed alpha
Helix 3
AA3
A
189 196Right-handed alpha
Helix 4
AA4
A
217 221Right-handed 310
Helix 5
AA5
A
223 229Right-handed alpha
Helix 6
AA6
A
230 233Right-handed 310
Helix 7
AA7
B
112 126Right-handed alpha
Helix 8
AA8
B
135 151Right-handed alpha
Helix 9
AA9
B
189 196Right-handed alpha
Helix 10
AB1
B
217 221Right-handed 310
Helix 11
AB2
B
223 229Right-handed alpha
Helix 12
AB3
B
230 233Right-handed 310
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There are 4 sheets in PDB entry 5NUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
210 215anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
210 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
114 119anti-parallel
Strand 3
C
104 109anti-parallel
Strand 4
C
82 85anti-parallel
Strand 5
C
133 134anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
114 119anti-parallel
Strand 3
D
104 109anti-parallel
Strand 4
D
82 85anti-parallel
Strand 5
D
133 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il