Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NUQ entry

There are 4 chains in PDB entry 5NUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 340
B	ALA 1	PHE 340
C	ALA 1	PHE 340
D	ALA 1	TYR 275

There are 51 helices in PDB entry 5NUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	110	Right-handed alpha
Helix 2	AA2	A	142	148	Right-handed alpha
Helix 3	AA3	A	197	203	Right-handed alpha
Helix 4	AA4	B	105	110	Right-handed alpha
Helix 5	AA5	B	143	148	Right-handed alpha
Helix 6	AA6	B	197	202	Right-handed alpha
Helix 7	AA7	C	105	110	Right-handed alpha
Helix 8	AA8	C	111	113	Right-handed 310
Helix 9	AA9	C	143	148	Right-handed alpha
Helix 10	AB1	C	197	202	Right-handed alpha
Helix 11	AB2	D	105	110	Right-handed alpha
Helix 12	AB3	D	111	113	Right-handed 310
Helix 13	AB4	D	143	148	Right-handed alpha
Helix 14	AB5	D	197	202	Right-handed alpha
Helix 15	AB6	E	105	110	Right-handed alpha
Helix 16	AB7	E	142	148	Right-handed alpha
Helix 17	AB8	E	197	202	Right-handed alpha
Helix 18	AB9	F	105	110	Right-handed alpha
Helix 19	AC1	F	143	148	Right-handed alpha
Helix 20	AC2	F	197	203	Right-handed alpha
Helix 21	AC3	G	16	30	Right-handed alpha
Helix 22	AC4	G	36	45	Right-handed alpha
Helix 23	AC5	G	48	63	Right-handed alpha
Helix 24	AC6	G	63	74	Right-handed alpha
Helix 25	AC7	G	76	93	Right-handed alpha
Helix 26	AC8	G	100	106	Right-handed alpha
Helix 27	AC9	G	107	110	Right-handed 310
Helix 28	AD1	G	116	124	Right-handed alpha
Helix 29	AD2	G	143	148	Right-handed alpha
Helix 30	AD3	G	149	153	Right-handed 310
Helix 31	AD4	G	156	159	Right-handed 310
Helix 32	AD5	G	160	179	Right-handed alpha
Helix 33	AD6	G	180	182	Right-handed 310
Helix 34	AD7	G	183	189	Right-handed alpha
Helix 35	AD8	G	192	209	Right-handed alpha
Helix 36	AD9	H	16	30	Right-handed alpha
Helix 37	AE1	H	30	35	Right-handed alpha
Helix 38	AE2	H	35	45	Right-handed alpha
Helix 39	AE3	H	48	62	Right-handed alpha
Helix 40	AE4	H	64	74	Right-handed alpha
Helix 41	AE5	H	76	93	Right-handed alpha
Helix 42	AE6	H	100	106	Right-handed alpha
Helix 43	AE7	H	107	110	Right-handed 310
Helix 44	AE8	H	116	124	Right-handed alpha
Helix 45	AE9	H	143	148	Right-handed alpha
Helix 46	AF1	H	149	153	Right-handed 310
Helix 47	AF2	H	156	160	Right-handed 310
Helix 48	AF3	H	161	179	Right-handed alpha
Helix 49	AF4	H	180	182	Right-handed 310
Helix 50	AF5	H	183	189	Right-handed alpha
Helix 51	AF6	H	192	209	Right-handed alpha

There are 18 sheets in PDB entry 5NUQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	49	first strand
Strand 2	A	9	23	anti-parallel
Strand 3	A	331	340	anti-parallel
Strand 4	A	307	316	anti-parallel
Strand 5	A	289	302	anti-parallel
Strand 6	A	269	281	anti-parallel
Strand 7	A	253	264	anti-parallel
Strand 8	A	225	235	anti-parallel
Strand 9	A	210	222	anti-parallel
Strand 10	A	185	195	anti-parallel
Strand 11	A	173	182	anti-parallel
Strand 12	A	151	158	anti-parallel
Strand 13	A	132	141	anti-parallel
Strand 14	A	94	102	anti-parallel
Strand 15	A	80	90	anti-parallel
Strand 16	A	57	66	anti-parallel
Strand 17	A	40	49	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	247	251	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	9	12	anti-parallel

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There are 17 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	49	first strand
Strand 2	B	9	23	anti-parallel
Strand 3	B	331	340	anti-parallel
Strand 4	B	307	316	anti-parallel
Strand 5	B	289	302	anti-parallel
Strand 6	B	269	281	anti-parallel
Strand 7	B	253	264	anti-parallel
Strand 8	B	225	235	anti-parallel
Strand 9	B	210	222	anti-parallel
Strand 10	B	185	195	anti-parallel
Strand 11	B	173	182	anti-parallel
Strand 12	B	151	158	anti-parallel
Strand 13	B	132	142	anti-parallel
Strand 14	B	94	102	anti-parallel
Strand 15	B	80	90	anti-parallel
Strand 16	B	55	66	anti-parallel
Strand 17	B	40	49	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	247	251	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	9	12	anti-parallel

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There are 17 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	49	first strand
Strand 2	C	9	23	anti-parallel
Strand 3	C	331	340	anti-parallel
Strand 4	C	307	316	anti-parallel
Strand 5	C	289	304	anti-parallel
Strand 6	C	269	281	anti-parallel
Strand 7	C	253	264	anti-parallel
Strand 8	C	225	235	anti-parallel
Strand 9	C	210	222	anti-parallel
Strand 10	C	185	195	anti-parallel
Strand 11	C	173	182	anti-parallel
Strand 12	C	151	158	anti-parallel
Strand 13	C	132	142	anti-parallel
Strand 14	C	94	102	anti-parallel
Strand 15	C	80	90	anti-parallel
Strand 16	C	55	66	anti-parallel
Strand 17	C	40	49	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	247	251	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	9	12	anti-parallel

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There are 17 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	49	first strand
Strand 2	D	9	24	anti-parallel
Strand 3	D	331	340	anti-parallel
Strand 4	D	307	316	anti-parallel
Strand 5	D	289	304	anti-parallel
Strand 6	D	269	281	anti-parallel
Strand 7	D	253	264	anti-parallel
Strand 8	D	225	235	anti-parallel
Strand 9	D	210	222	anti-parallel
Strand 10	D	185	195	anti-parallel
Strand 11	D	173	182	anti-parallel
Strand 12	D	151	158	anti-parallel
Strand 13	D	132	141	anti-parallel
Strand 14	D	94	102	anti-parallel
Strand 15	D	80	90	anti-parallel
Strand 16	D	55	66	anti-parallel
Strand 17	D	40	50	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	247	251	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	9	12	anti-parallel

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There are 17 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	49	first strand
Strand 2	E	9	24	anti-parallel
Strand 3	E	331	340	anti-parallel
Strand 4	E	307	316	anti-parallel
Strand 5	E	289	304	anti-parallel
Strand 6	E	269	281	anti-parallel
Strand 7	E	253	264	anti-parallel
Strand 8	E	225	235	anti-parallel
Strand 9	E	210	222	anti-parallel
Strand 10	E	185	195	anti-parallel
Strand 11	E	173	182	anti-parallel
Strand 12	E	151	158	anti-parallel
Strand 13	E	132	141	anti-parallel
Strand 14	E	94	102	anti-parallel
Strand 15	E	80	90	anti-parallel
Strand 16	E	55	66	anti-parallel
Strand 17	E	40	50	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	242	first strand
Strand 2	E	247	251	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	9	12	anti-parallel

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There are 17 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	49	first strand
Strand 2	F	9	24	anti-parallel
Strand 3	F	331	340	anti-parallel
Strand 4	F	307	316	anti-parallel
Strand 5	F	289	304	anti-parallel
Strand 6	F	269	281	anti-parallel
Strand 7	F	253	263	anti-parallel
Strand 8	F	225	235	anti-parallel
Strand 9	F	210	222	anti-parallel
Strand 10	F	185	195	anti-parallel
Strand 11	F	173	182	anti-parallel
Strand 12	F	151	158	anti-parallel
Strand 13	F	132	142	anti-parallel
Strand 14	F	94	102	anti-parallel
Strand 15	F	80	90	anti-parallel
Strand 16	F	55	66	anti-parallel
Strand 17	F	40	50	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	242	first strand
Strand 2	F	247	251	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	9	12	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUQ