Analysis of interatomic Contacts of Structural Units in PDB entry:
5NV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NV5 entry

There are 4 chains in PDB entry 5NV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8LEU 207
B
 GLU 10LEU 207
C
 HIS 7LEU 207
D
 GLU 10LEU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5NV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 39Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
49 62Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
103 118Right-handed alpha
Helix 6
AA6
A
123 140Right-handed alpha
Helix 7
AA7
A
146 149Right-handed 310
Helix 8
AA8
A
150 161Right-handed alpha
Helix 9
AA9
A
165 175Right-handed alpha
Helix 10
AB1
A
182 197Right-handed alpha
Helix 11
AB2
A
203 207Right-handed 310
Helix 12
AB3
B
17 39Right-handed alpha
Helix 13
AB4
B
40 45Right-handed 310
Helix 14
AB5
B
49 62Right-handed alpha
Helix 15
AB6
B
88 99Right-handed alpha
Helix 16
AB7
B
103 118Right-handed alpha
Helix 17
AB8
B
123 141Right-handed alpha
Helix 18
AB9
B
146 149Right-handed 310
Helix 19
AC1
B
150 161Right-handed alpha
Helix 20
AC2
B
165 175Right-handed alpha
Helix 21
AC3
B
182 197Right-handed alpha
Helix 22
AC4
B
203 207Right-handed 310
Helix 23
AC5
C
17 39Right-handed alpha
Helix 24
AC6
C
40 45Right-handed 310
Helix 25
AC7
C
49 62Right-handed alpha
Helix 26
AC8
C
88 99Right-handed alpha
Helix 27
AC9
C
103 118Right-handed alpha
Helix 28
AD1
C
123 141Right-handed alpha
Helix 29
AD2
C
146 149Right-handed 310
Helix 30
AD3
C
150 161Right-handed alpha
Helix 31
AD4
C
165 175Right-handed alpha
Helix 32
AD5
C
182 197Right-handed alpha
Helix 33
AD6
C
203 207Right-handed 310
Helix 34
AD7
D
17 39Right-handed alpha
Helix 35
AD8
D
40 44Right-handed 310
Helix 36
AD9
D
49 62Right-handed alpha
Helix 37
AE1
D
85 87Right-handed 310
Helix 38
AE2
D
88 99Right-handed alpha
Helix 39
AE3
D
103 118Right-handed alpha
Helix 40
AE4
D
123 141Right-handed alpha
Helix 41
AE5
D
146 149Right-handed 310
Helix 42
AE6
D
150 161Right-handed alpha
Helix 43
AE7
D
165 175Right-handed alpha
Helix 44
AE8
D
182 198Right-handed alpha
Helix 45
AE9
D
203 207Right-handed 310
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There are 4 sheets in PDB entry 5NV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
176 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
176 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 144first strand
Strand 2
D
176 177anti-parallel
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