Analysis of interatomic Contacts of Structural Units in PDB entry:
5NV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NV8 entry

There is 1 chain in PDB entry 5NV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5NV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
155 165Right-handed alpha
Helix 3
AA3
A
166 177Right-handed alpha
Helix 4
AA4
A
197 208Right-handed alpha
Helix 5
AA5
A
221 230Right-handed alpha
Helix 6
AA6
A
254 265Right-handed alpha
Helix 7
AA7
A
273 283Right-handed alpha
Helix 8
AA8
A
301 310Right-handed alpha
Helix 9
AA9
A
314 331Right-handed alpha
Helix 10
AB1
A
333 343Right-handed alpha
Helix 11
AB2
A
344 361Right-handed alpha
Helix 12
AB3
A
364 375Right-handed alpha
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There are 2 sheets in PDB entry 5NV8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
35 38parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
245 250anti-parallel
Strand 3
A
212 217parallel
Strand 4
A
186 190parallel
Strand 5
A
267 271parallel
Strand 6
A
286 289parallel
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