Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NVA entry

There is 1 chain in PDB entry 5NVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5LEU 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5NVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 30Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
42 44Right-handed 310
Helix 4
AA4
A
46 59Right-handed alpha
Helix 5
AA5
A
60 74Right-handed alpha
Helix 6
AA6
A
76 78Right-handed 310
Helix 7
AA7
A
79 88Right-handed alpha
Helix 8
AA8
A
88 96Right-handed alpha
Helix 9
AA9
A
96 103Right-handed alpha
Helix 10
AB1
A
109 116Right-handed alpha
Helix 11
AB2
A
117 152Right-handed alpha
Helix 12
AB3
A
154 204Right-handed alpha
Helix 13
AB4
A
206 218Right-handed alpha
Helix 14
AB5
A
223 227Right-handed 310
Helix 15
AB6
A
235 253Right-handed alpha
Helix 16
AB7
A
254 259Right-handed alpha
Helix 17
AB8
A
260 262Right-handed 310
Helix 18
AB9
A
266 302Right-handed alpha
Helix 19
AC1
A
303 306Right-handed 310
Helix 20
AC2
A
311 313Right-handed 310
Helix 21
AC3
A
314 323Right-handed alpha
Helix 22
AC4
A
327 359Right-handed alpha
Helix 23
AC5
A
369 397Right-handed alpha
Helix 24
AC6
A
410 413Right-handed 310
Helix 25
AC7
A
414 428Right-handed alpha
Helix 26
AC8
A
432 453Right-handed alpha
Helix 27
AC9
A
459 476Right-handed alpha
Helix 28
AD1
A
477 480Right-handed 310
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There are no sheets in PDB entry 5NVA
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