Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NVL entry

There are 4 chains in PDB entry 5NVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47THR 218
B
 LYS 37THR 105
C
 GLU 51THR 218
D
 LYS 37ARG 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5NVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 100Right-handed alpha
Helix 2
AA2
A
127 130Right-handed 310
Helix 3
AA3
A
144 156Right-handed alpha
Helix 4
AA4
A
190 203Right-handed alpha
Helix 5
AA5
B
45 51Right-handed alpha
Helix 6
AA6
B
86 93Right-handed alpha
Helix 7
AA7
B
99 104Right-handed alpha
Helix 8
AA8
C
91 100Right-handed alpha
Helix 9
AA9
C
127 130Right-handed 310
Helix 10
AB1
C
144 156Right-handed alpha
Helix 11
AB2
C
190 204Right-handed alpha
Helix 12
AB3
D
45 51Right-handed alpha
Helix 13
AB4
D
86 93Right-handed alpha
Helix 14
AB5
D
99 103Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5NVL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
133 139anti-parallel
Strand 7
A
212 216anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 90first strand
Strand 2
C
56 66anti-parallel
Strand 3
C
111 117anti-parallel
Strand 4
C
166 173anti-parallel
Strand 5
C
178 184anti-parallel
Strand 6
C
133 139anti-parallel
Strand 7
C
212 216anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il