Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NVM entry

There are 4 chains in PDB entry 5NVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 46ILE 221
B
 TYR 36GLN 72
C
 GLU 51ASP 219
D
 TYR 36GLN 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5NVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 100Right-handed alpha
Helix 2
2
A
144 156Right-handed alpha
Helix 3
3
A
190 203Right-handed alpha
Helix 4
4
B
45 51Right-handed alpha
Helix 5
5
C
91 100Right-handed alpha
Helix 6
6
C
144 156Right-handed alpha
Helix 7
7
C
190 203Right-handed alpha
Helix 8
8
D
45 51Right-handed alpha
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There are no sheets in PDB entry 5NVM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il