Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NVN entry

There are 4 chains in PDB entry 5NVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 46PRO 224
B
 THR 50SER 83
C
 GLY 46PRO 224
D
 MET 49SER 83
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5NVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 100Right-handed alpha
Helix 2
AA2
A
127 130Right-handed 310
Helix 3
AA3
A
144 156Right-handed alpha
Helix 4
AA4
A
190 203Right-handed alpha
Helix 5
AA5
A
217 221Right-handed alpha
Helix 6
AA6
B
56 62Right-handed alpha
Helix 7
AA7
C
91 100Right-handed alpha
Helix 8
AA8
C
144 156Right-handed alpha
Helix 9
AA9
C
190 203Right-handed alpha
Helix 10
AB1
C
218 221Right-handed 310
Helix 11
AB2
D
56 62Right-handed alpha
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There are 2 sheets in PDB entry 5NVN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
C
212 216anti-parallel
Strand 3
C
133 139anti-parallel
Strand 4
C
178 184anti-parallel
Strand 5
C
166 173anti-parallel
Strand 6
C
110 117anti-parallel
Strand 7
C
56 67anti-parallel
Strand 8
C
83 90anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
56 65anti-parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
133 139anti-parallel
Strand 7
A
212 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il