Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NVS entry

There are 16 chains in PDB entry 5NVS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 181	UNK 1421
D	UNK 283	UNK 710
C	UNK 283	UNK 710
B	UNK 181	UNK 1419
F	UNK 44	UNK 394
E	UNK 63	UNK 372
2	UNK 8	UNK 179
1	UNK 7	UNK 179
I	UNK 5	UNK 89
J	UNK 5	UNK 89
K	UNK 9	UNK 111
L	UNK 8	UNK 111
M	UNK 111	UNK 137
N	UNK 110	UNK 138
R	UNK 11	UNK 130
S	UNK 10	UNK 129

There are122 helices in PDB entry 5NVS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	198	Right-handed alpha
Helix 2	AA2	A	216	237	Right-handed alpha
Helix 3	AA3	A	249	270	Right-handed alpha
Helix 4	AA4	A	274	284	Right-handed alpha
Helix 5	AA5	A	290	312	Right-handed alpha
Helix 6	AA6	A	329	345	Right-handed alpha
Helix 7	AA7	A	351	374	Right-handed alpha
Helix 8	AA8	A	382	417	Right-handed alpha
Helix 9	AA9	A	420	454	Right-handed alpha
Helix 10	AB1	A	458	477	Right-handed alpha
Helix 11	AB2	A	489	514	Right-handed alpha
Helix 12	AB3	A	520	531	Right-handed alpha
Helix 13	AB4	A	535	569	Right-handed alpha
Helix 14	AB5	A	577	604	Right-handed alpha
Helix 15	AB6	A	616	644	Right-handed alpha
Helix 16	AB7	A	680	718	Right-handed alpha
Helix 17	AB8	A	729	742	Right-handed alpha
Helix 18	AB9	A	754	767	Right-handed alpha
Helix 19	AC1	A	774	787	Right-handed alpha
Helix 20	AC2	A	805	817	Right-handed alpha
Helix 21	AC3	A	818	853	Right-handed alpha
Helix 22	AC4	A	863	887	Right-handed alpha
Helix 23	AC5	A	916	950	Right-handed alpha
Helix 24	AC6	A	969	994	Right-handed alpha
Helix 25	AC7	A	998	1010	Right-handed alpha
Helix 26	AC8	A	1013	1025	Right-handed alpha
Helix 27	AC9	A	1034	1070	Right-handed alpha
Helix 28	AD1	A	1104	1116	Right-handed alpha
Helix 29	AD2	A	1117	1160	Right-handed alpha
Helix 30	AD3	A	1191	1223	Right-handed alpha
Helix 31	AD4	A	1255	1285	Right-handed alpha
Helix 32	AD5	A	1317	1354	Right-handed alpha
Helix 33	AD6	A	1357	1389	Right-handed alpha
Helix 34	AD7	A	1392	1421	Right-handed alpha
Helix 35	AD8	D	299	304	Right-handed alpha
Helix 36	AD9	D	640	642	Right-handed 310
Helix 37	AE1	C	299	304	Right-handed alpha
Helix 38	AE2	C	640	642	Right-handed 310
Helix 39	AE3	B	189	198	Right-handed alpha
Helix 40	AE4	B	216	237	Right-handed alpha
Helix 41	AE5	B	249	270	Right-handed alpha
Helix 42	AE6	B	274	284	Right-handed alpha
Helix 43	AE7	B	290	311	Right-handed alpha
Helix 44	AE8	B	329	345	Right-handed alpha
Helix 45	AE9	B	351	373	Right-handed alpha
Helix 46	AF1	B	382	417	Right-handed alpha
Helix 47	AF2	B	424	453	Right-handed alpha
Helix 48	AF3	B	458	474	Right-handed alpha
Helix 49	AF4	B	485	514	Right-handed alpha
Helix 50	AF5	B	520	530	Right-handed alpha
Helix 51	AF6	B	535	543	Right-handed alpha
Helix 52	AF7	B	546	569	Right-handed alpha
Helix 53	AF8	B	577	604	Right-handed alpha
Helix 54	AF9	B	612	644	Right-handed alpha
Helix 55	AG1	B	680	718	Right-handed alpha
Helix 56	AG2	B	729	742	Right-handed alpha
Helix 57	AG3	B	754	767	Right-handed alpha
Helix 58	AG4	B	774	787	Right-handed alpha
Helix 59	AG5	B	805	817	Right-handed alpha
Helix 60	AG6	B	818	853	Right-handed alpha
Helix 61	AG7	B	863	887	Right-handed alpha
Helix 62	AG8	B	916	948	Right-handed alpha
Helix 63	AG9	B	969	994	Right-handed alpha
Helix 64	AH1	B	996	1007	Right-handed alpha
Helix 65	AH2	B	1040	1068	Right-handed alpha
Helix 66	AH3	B	1105	1114	Right-handed alpha
Helix 67	AH4	B	1117	1160	Right-handed alpha
Helix 68	AH5	B	1191	1223	Right-handed alpha
Helix 69	AH6	B	1255	1285	Right-handed alpha
Helix 70	AH7	B	1317	1354	Right-handed alpha
Helix 71	AH8	B	1357	1388	Right-handed alpha
Helix 72	AH9	B	1391	1419	Right-handed alpha
Helix 73	AI1	F	56	69	Right-handed alpha
Helix 74	AI2	F	119	124	Right-handed alpha
Helix 75	AI3	F	125	130	Right-handed 310
Helix 76	AI4	F	131	136	Right-handed alpha
Helix 77	AI5	F	147	150	Right-handed 310
Helix 78	AI6	F	151	168	Right-handed alpha
Helix 79	AI7	F	171	186	Right-handed alpha
Helix 80	AI8	F	233	243	Right-handed alpha
Helix 81	AI9	F	246	263	Right-handed alpha
Helix 82	AJ1	F	278	287	Right-handed alpha
Helix 83	AJ2	F	316	323	Right-handed alpha
Helix 84	AJ3	F	328	341	Right-handed alpha
Helix 85	AJ4	F	381	390	Right-handed alpha
Helix 86	AJ5	E	76	85	Right-handed alpha
Helix 87	AJ6	E	88	92	Right-handed 310
Helix 88	AJ7	E	128	136	Right-handed 310
Helix 89	AJ8	E	137	142	Right-handed alpha
Helix 90	AJ9	E	154	156	Right-handed 310
Helix 91	AK1	E	157	177	Right-handed alpha
Helix 92	AK2	E	182	195	Right-handed alpha
Helix 93	AK3	E	247	257	Right-handed alpha
Helix 94	AK4	E	260	277	Right-handed alpha
Helix 95	AK5	E	292	301	Right-handed alpha
Helix 96	AK6	E	329	336	Right-handed alpha
Helix 97	AK7	E	341	354	Right-handed alpha
Helix 98	AK8	E	365	372	Right-handed alpha
Helix 99	AK9	2	9	22	Right-handed alpha
Helix 100	AL1	2	31	51	Right-handed alpha
Helix 101	AL2	2	83	90	Right-handed alpha
Helix 102	AL3	2	126	145	Right-handed alpha
Helix 103	AL4	2	158	179	Right-handed alpha
Helix 104	AL5	1	8	22	Right-handed alpha
Helix 105	AL6	1	31	51	Right-handed alpha
Helix 106	AL7	1	83	90	Right-handed alpha
Helix 107	AL8	1	126	145	Right-handed alpha
Helix 108	AL9	1	158	179	Right-handed alpha
Helix 109	AM1	I	14	30	Right-handed alpha
Helix 110	AM2	I	34	51	Right-handed alpha
Helix 111	AM3	J	14	32	Right-handed alpha
Helix 112	AM4	J	34	51	Right-handed alpha
Helix 113	AM5	K	11	28	Right-handed alpha
Helix 114	AM6	K	33	54	Right-handed alpha
Helix 115	AM7	L	11	28	Right-handed alpha
Helix 116	AM8	L	33	55	Right-handed alpha
Helix 117	AM9	R	13	24	Right-handed alpha
Helix 118	AN1	R	46	72	Right-handed alpha
Helix 119	AN2	R	109	129	Right-handed alpha
Helix 120	AN3	S	13	24	Right-handed alpha
Helix 121	AN4	S	46	72	Right-handed alpha
Helix 122	AN5	S	109	125	Right-handed alpha

There are 25 sheets in PDB entry 5NVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	317	first strand
Strand 2	D	322	325	anti-parallel
Strand 3	D	664	669	anti-parallel
Strand 4	D	653	658	anti-parallel
Strand 5	D	644	649	anti-parallel
Strand 6	D	633	638	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	342	first strand
Strand 2	D	701	709	anti-parallel
Strand 3	D	691	697	anti-parallel
Strand 4	D	675	680	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	352	first strand
Strand 2	D	358	363	anti-parallel
Strand 3	D	366	371	anti-parallel
Strand 4	D	377	381	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	451	first strand
Strand 2	D	457	462	anti-parallel
Strand 3	D	467	471	anti-parallel
Strand 4	D	476	481	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	493	first strand
Strand 2	D	499	504	anti-parallel
Strand 3	D	508	513	anti-parallel
Strand 4	D	518	524	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	534	first strand
Strand 2	D	541	546	anti-parallel
Strand 3	D	551	555	anti-parallel
Strand 4	D	561	565	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	579	584	first strand
Strand 2	D	590	595	anti-parallel
Strand 3	D	600	604	anti-parallel
Strand 4	D	622	626	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	317	first strand
Strand 2	C	322	325	anti-parallel
Strand 3	C	664	669	anti-parallel
Strand 4	C	653	658	anti-parallel
Strand 5	C	644	649	anti-parallel
Strand 6	C	633	638	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	342	first strand
Strand 2	C	701	709	anti-parallel
Strand 3	C	691	697	anti-parallel
Strand 4	C	675	680	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	358	363	anti-parallel
Strand 3	C	366	371	anti-parallel
Strand 4	C	377	381	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	451	first strand
Strand 2	C	457	462	anti-parallel
Strand 3	C	467	474	anti-parallel
Strand 4	C	476	481	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	493	first strand
Strand 2	C	499	504	anti-parallel
Strand 3	C	508	513	anti-parallel
Strand 4	C	518	524	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	534	first strand
Strand 2	C	541	546	anti-parallel
Strand 3	C	551	555	anti-parallel
Strand 4	C	561	565	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	584	first strand
Strand 2	C	590	595	anti-parallel
Strand 3	C	600	604	anti-parallel
Strand 4	C	622	626	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	99	first strand
Strand 2	F	106	115	anti-parallel
Strand 3	F	47	54	parallel
Strand 4	F	138	145	parallel
Strand 5	F	225	231	parallel
Strand 6	F	267	270	parallel
Strand 7	F	309	310	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	113	122	anti-parallel
Strand 3	E	68	74	parallel
Strand 4	E	144	151	parallel
Strand 5	E	239	245	parallel
Strand 6	E	281	284	parallel
Strand 7	E	322	323	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	63	65	first strand
Strand 2	2	75	77	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	63	66	first strand
Strand 2	1	95	98	anti-parallel
Strand 3	1	117	118	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	13	first strand
Strand 2	I	72	78	anti-parallel
Strand 3	I	81	87	anti-parallel
Strand 4	I	54	69	anti-parallel
Strand 5	J	54	68	anti-parallel
Strand 6	M	129	135	first strand

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	13	first strand
Strand 2	J	72	78	anti-parallel
Strand 3	J	81	87	anti-parallel
Strand 4	J	54	68	anti-parallel
Strand 5	I	54	69	anti-parallel
Strand 6	N	130	135	first strand

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	89	96	first strand
Strand 2	K	100	109	anti-parallel
Strand 3	K	60	69	anti-parallel
Strand 4	L	75	83	anti-parallel
Strand 5	N	113	114	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	89	96	first strand
Strand 2	K	100	109	anti-parallel
Strand 3	K	60	69	anti-parallel
Strand 4	L	75	83	anti-parallel
Strand 5	N	118	122	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	96	first strand
Strand 2	L	100	110	anti-parallel
Strand 3	L	59	69	anti-parallel
Strand 4	K	75	83	anti-parallel
Strand 5	M	113	114	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	96	first strand
Strand 2	L	100	110	anti-parallel
Strand 3	L	59	69	anti-parallel
Strand 4	K	75	83	anti-parallel
Strand 5	M	118	122	anti-parallel

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There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	39	43	first strand
Strand 2	R	27	34	anti-parallel
Strand 3	R	98	105	anti-parallel
Strand 4	R	87	93	anti-parallel
Strand 5	R	77	83	anti-parallel
Strand 6	S	79	84	anti-parallel
Strand 7	S	87	93	anti-parallel
Strand 8	S	98	105	anti-parallel
Strand 9	S	27	34	anti-parallel
Strand 10	S	39	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NVS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NVS